Gene : TSL1 C. reinhardtii v5.6
Primary Identifier:  ? Cre13.g578451 Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED
Genomic Order:  381 Name:  ? Cre13.g578451
Secondary Identifier:  ? PAC:30784550
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre13.g578451 0.5kb upstream 0.5kb upstream 12065 true chromosome_13: 2198323-2210387 Chlamydomonas reinhardtii
Cre13.g578451 0.5kb upstream 0.5kb upstream 500 false chromosome_13: 2209888-2210387 Chlamydomonas reinhardtii
Cre13.g578451 0.5kb downstream 0.5kb downstream 12065 true chromosome_13: 2197823-2209887 Chlamydomonas reinhardtii
Cre13.g578451 0.5kb downstream 0.5kb downstream 500 false chromosome_13: 2197823-2198322 Chlamydomonas reinhardtii
Cre13.g578451 1.0kb upstream 1.0kb upstream 12565 true chromosome_13: 2198323-2210887 Chlamydomonas reinhardtii
Cre13.g578451 1.0kb upstream 1.0kb upstream 1000 false chromosome_13: 2209888-2210887 Chlamydomonas reinhardtii
Cre13.g578451 1.0kb downstream 1.0kb downstream 12565 true chromosome_13: 2197323-2209887 Chlamydomonas reinhardtii
Cre13.g578451 1.0kb downstream 1.0kb downstream 1000 false chromosome_13: 2197323-2198322 Chlamydomonas reinhardtii
Cre13.g578451 2.0kb upstream 2.0kb upstream 13565 true chromosome_13: 2198323-2211887 Chlamydomonas reinhardtii
Cre13.g578451 2.0kb upstream 2.0kb upstream 2000 false chromosome_13: 2209888-2211887 Chlamydomonas reinhardtii
Cre13.g578451 2.0kb downstream 2.0kb downstream 13565 true chromosome_13: 2196323-2209887 Chlamydomonas reinhardtii
Cre13.g578451 2.0kb downstream 2.0kb downstream 2000 false chromosome_13: 2196323-2198322 Chlamydomonas reinhardtii
Cre13.g578451 5.0kb upstream 5.0kb upstream 16565 true chromosome_13: 2198323-2214887 Chlamydomonas reinhardtii
Cre13.g578451 5.0kb upstream 5.0kb upstream 5000 false chromosome_13: 2209888-2214887 Chlamydomonas reinhardtii
Cre13.g578451 5.0kb downstream 5.0kb downstream 16565 true chromosome_13: 2193323-2209887 Chlamydomonas reinhardtii
Cre13.g578451 5.0kb downstream 5.0kb downstream 5000 false chromosome_13: 2193323-2198322 Chlamydomonas reinhardtii
Cre13.g578451 10.0kb upstream 10.0kb upstream 21565 true chromosome_13: 2198323-2219887 Chlamydomonas reinhardtii
Cre13.g578451 10.0kb upstream 10.0kb upstream 10000 false chromosome_13: 2209888-2219887 Chlamydomonas reinhardtii
Cre13.g578451 10.0kb downstream 10.0kb downstream 21565 true chromosome_13: 2188323-2209887 Chlamydomonas reinhardtii
Cre13.g578451 10.0kb downstream 10.0kb downstream 10000 false chromosome_13: 2188323-2198322 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108492 5260 Chlorophyte View MSA
123424257 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.035        
cufflinks 5.566        
cufflinks 3.514        
cufflinks 5.543        
cufflinks 5.692        
cufflinks 5.336        
cufflinks 2.08       Low
cufflinks 5.373        
cufflinks 8.03        
cufflinks 1.458       Low
cufflinks 7.61        
cufflinks 6.477        
cufflinks 2.331       Low
cufflinks 6.305        
cufflinks 4.889        
cufflinks 10.201       High
cufflinks 9.266       High
cufflinks 4.457        
cufflinks 0.592       Low
cufflinks 3.044        
cufflinks 5.155        
cufflinks 8.984        
cufflinks 3.666        
cufflinks 7.833        
cufflinks 9.983       High
cufflinks 26.3503 0.0 53.0259    
cufflinks 34.0202 7.56678 60.4737 High  
cufflinks 8.07107 0.0 16.2203    
cufflinks 13.2875 0.766455 25.8084    
cufflinks 20.2755 2.71284 37.8382    

0 Strain