Gene : VIPP1 C. reinhardtii v5.6
Primary Identifier:  ? Cre13.g583550 Defline:  (1 of 2) K03969 - phage shock protein A (pspA)
Genomic Order:  494 Name:  ? Cre13.g583550
Secondary Identifier:  ? PAC:30784036
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre13.g583550 0.5kb upstream 0.5kb upstream 4310 true chromosome_13: 2899024-2903333 Chlamydomonas reinhardtii
Cre13.g583550 0.5kb upstream 0.5kb upstream 500 false chromosome_13: 2902834-2903333 Chlamydomonas reinhardtii
Cre13.g583550 0.5kb downstream 0.5kb downstream 4310 true chromosome_13: 2898524-2902833 Chlamydomonas reinhardtii
Cre13.g583550 0.5kb downstream 0.5kb downstream 500 false chromosome_13: 2898524-2899023 Chlamydomonas reinhardtii
Cre13.g583550 1.0kb upstream 1.0kb upstream 4810 true chromosome_13: 2899024-2903833 Chlamydomonas reinhardtii
Cre13.g583550 1.0kb upstream 1.0kb upstream 1000 false chromosome_13: 2902834-2903833 Chlamydomonas reinhardtii
Cre13.g583550 1.0kb downstream 1.0kb downstream 4810 true chromosome_13: 2898024-2902833 Chlamydomonas reinhardtii
Cre13.g583550 1.0kb downstream 1.0kb downstream 1000 false chromosome_13: 2898024-2899023 Chlamydomonas reinhardtii
Cre13.g583550 2.0kb upstream 2.0kb upstream 5810 true chromosome_13: 2899024-2904833 Chlamydomonas reinhardtii
Cre13.g583550 2.0kb upstream 2.0kb upstream 2000 false chromosome_13: 2902834-2904833 Chlamydomonas reinhardtii
Cre13.g583550 2.0kb downstream 2.0kb downstream 5810 true chromosome_13: 2897024-2902833 Chlamydomonas reinhardtii
Cre13.g583550 2.0kb downstream 2.0kb downstream 2000 false chromosome_13: 2897024-2899023 Chlamydomonas reinhardtii
Cre13.g583550 5.0kb upstream 5.0kb upstream 8810 true chromosome_13: 2899024-2907833 Chlamydomonas reinhardtii
Cre13.g583550 5.0kb upstream 5.0kb upstream 5000 false chromosome_13: 2902834-2907833 Chlamydomonas reinhardtii
Cre13.g583550 5.0kb downstream 5.0kb downstream 8810 true chromosome_13: 2894024-2902833 Chlamydomonas reinhardtii
Cre13.g583550 5.0kb downstream 5.0kb downstream 5000 false chromosome_13: 2894024-2899023 Chlamydomonas reinhardtii
Cre13.g583550 10.0kb upstream 10.0kb upstream 13810 true chromosome_13: 2899024-2912833 Chlamydomonas reinhardtii
Cre13.g583550 10.0kb upstream 10.0kb upstream 10000 false chromosome_13: 2902834-2912833 Chlamydomonas reinhardtii
Cre13.g583550 10.0kb downstream 10.0kb downstream 13810 true chromosome_13: 2889024-2902833 Chlamydomonas reinhardtii
Cre13.g583550 10.0kb downstream 10.0kb downstream 10000 false chromosome_13: 2889024-2899023 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111094 5260 Chlorophyte View MSA
123427031 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.169     High  
cufflinks 28.922     High  
cufflinks 32.048     High  
cufflinks 20.99     High  
cufflinks 37.603     High  
cufflinks 41.098     High  
cufflinks 19.1     High Low
cufflinks 29.437     High  
cufflinks 49.368     High  
cufflinks 58.209     High High
cufflinks 9.906       Low
cufflinks 28.754     High  
cufflinks 86.35     High High
cufflinks 61.538     High High
cufflinks 15.463     High Low
cufflinks 55.998     High  
cufflinks 54.69     High  
cufflinks 47.728     High  
cufflinks 12.773     High Low
cufflinks 52.568     High  
cufflinks 22.726     High  
cufflinks 38.563     High  
cufflinks 43.424     High  
cufflinks 30.246     High  
cufflinks 46.412     High  
cufflinks 477.612 26.9752 928.249 High High
cufflinks 67.343 14.2614 120.425 High  
cufflinks 67.9974 0.0 140.838 High Low
cufflinks 52.0612 0.0 105.244 High Low
cufflinks 76.8492 5.89996 147.798 High  

0 Strain