Gene : Cre16.g661800 C. reinhardtii v5.6
Defline:  (1 of 1) PF04949 - Transcriptional activator (Transcrip_act) Genomic Order:  435
Name:  ? Cre16.g661800 Secondary Identifier:  ? PAC:30777365
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g661800 0.5kb upstream 0.5kb upstream 3350 true chromosome_16: 2618535-2621884 Chlamydomonas reinhardtii
Cre16.g661800 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 2618535-2619034 Chlamydomonas reinhardtii
Cre16.g661800 0.5kb downstream 0.5kb downstream 3350 true chromosome_16: 2619035-2622384 Chlamydomonas reinhardtii
Cre16.g661800 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 2621885-2622384 Chlamydomonas reinhardtii
Cre16.g661800 1.0kb upstream 1.0kb upstream 3850 true chromosome_16: 2618035-2621884 Chlamydomonas reinhardtii
Cre16.g661800 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 2618035-2619034 Chlamydomonas reinhardtii
Cre16.g661800 1.0kb downstream 1.0kb downstream 3850 true chromosome_16: 2619035-2622884 Chlamydomonas reinhardtii
Cre16.g661800 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 2621885-2622884 Chlamydomonas reinhardtii
Cre16.g661800 2.0kb upstream 2.0kb upstream 4850 true chromosome_16: 2617035-2621884 Chlamydomonas reinhardtii
Cre16.g661800 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 2617035-2619034 Chlamydomonas reinhardtii
Cre16.g661800 2.0kb downstream 2.0kb downstream 4850 true chromosome_16: 2619035-2623884 Chlamydomonas reinhardtii
Cre16.g661800 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 2621885-2623884 Chlamydomonas reinhardtii
Cre16.g661800 5.0kb upstream 5.0kb upstream 7850 true chromosome_16: 2614035-2621884 Chlamydomonas reinhardtii
Cre16.g661800 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 2614035-2619034 Chlamydomonas reinhardtii
Cre16.g661800 5.0kb downstream 5.0kb downstream 7850 true chromosome_16: 2619035-2626884 Chlamydomonas reinhardtii
Cre16.g661800 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 2621885-2626884 Chlamydomonas reinhardtii
Cre16.g661800 10.0kb upstream 10.0kb upstream 12850 true chromosome_16: 2609035-2621884 Chlamydomonas reinhardtii
Cre16.g661800 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 2609035-2619034 Chlamydomonas reinhardtii
Cre16.g661800 10.0kb downstream 10.0kb downstream 12850 true chromosome_16: 2619035-2631884 Chlamydomonas reinhardtii
Cre16.g661800 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 2621885-2631884 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124098290 5260 Chlorophyte View MSA
123426204 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.175        
cufflinks 1.708        
cufflinks 1.41        
cufflinks 1.132        
cufflinks 1.572        
cufflinks 1.424        
cufflinks 1.853       High
cufflinks 1.472        
cufflinks 1.449        
cufflinks 0.494       Low
cufflinks 0.748       Low
cufflinks 1.326        
cufflinks 0.951        
cufflinks 1.784       High
cufflinks 1.011        
cufflinks 1.353        
cufflinks 1.11        
cufflinks 1.212        
cufflinks 0.504       Low
cufflinks 2.139       High
cufflinks 0.823       Low
cufflinks 0.948        
cufflinks 1.8       High
cufflinks 1.344        
cufflinks 1.038        
cufflinks 1.14528 0.0 2.37217   Low
cufflinks 11.0494 2.32416 19.7746   High
cufflinks 6.89311 0.0 14.65   High
cufflinks 3.22508 0.253071 6.19709    
cufflinks 10.6029 1.79247 19.4134   High

0 Strain