Gene : SHMT1 C. reinhardtii v5.6
Primary Identifier:  ? Cre16.g664550 Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL
Genomic Order:  495 Name:  ? Cre16.g664550
Secondary Identifier:  ? PAC:30776923
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii GLYSYN-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-2161 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-3841 Chlamydomonas reinhardtii pathologic  
Creinhardtii SER-GLYSYN-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g664550 0.5kb upstream 0.5kb upstream 5593 true chromosome_16: 2994585-3000177 Chlamydomonas reinhardtii
Cre16.g664550 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 2999678-3000177 Chlamydomonas reinhardtii
Cre16.g664550 0.5kb downstream 0.5kb downstream 5593 true chromosome_16: 2994085-2999677 Chlamydomonas reinhardtii
Cre16.g664550 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 2994085-2994584 Chlamydomonas reinhardtii
Cre16.g664550 1.0kb upstream 1.0kb upstream 6093 true chromosome_16: 2994585-3000677 Chlamydomonas reinhardtii
Cre16.g664550 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 2999678-3000677 Chlamydomonas reinhardtii
Cre16.g664550 1.0kb downstream 1.0kb downstream 6093 true chromosome_16: 2993585-2999677 Chlamydomonas reinhardtii
Cre16.g664550 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 2993585-2994584 Chlamydomonas reinhardtii
Cre16.g664550 2.0kb upstream 2.0kb upstream 7093 true chromosome_16: 2994585-3001677 Chlamydomonas reinhardtii
Cre16.g664550 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 2999678-3001677 Chlamydomonas reinhardtii
Cre16.g664550 2.0kb downstream 2.0kb downstream 7093 true chromosome_16: 2992585-2999677 Chlamydomonas reinhardtii
Cre16.g664550 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 2992585-2994584 Chlamydomonas reinhardtii
Cre16.g664550 5.0kb upstream 5.0kb upstream 10093 true chromosome_16: 2994585-3004677 Chlamydomonas reinhardtii
Cre16.g664550 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 2999678-3004677 Chlamydomonas reinhardtii
Cre16.g664550 5.0kb downstream 5.0kb downstream 10093 true chromosome_16: 2989585-2999677 Chlamydomonas reinhardtii
Cre16.g664550 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 2989585-2994584 Chlamydomonas reinhardtii
Cre16.g664550 10.0kb upstream 10.0kb upstream 15093 true chromosome_16: 2994585-3009677 Chlamydomonas reinhardtii
Cre16.g664550 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 2999678-3009677 Chlamydomonas reinhardtii
Cre16.g664550 10.0kb downstream 10.0kb downstream 15093 true chromosome_16: 2984585-2999677 Chlamydomonas reinhardtii
Cre16.g664550 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 2984585-2994584 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108695 5260 Chlorophyte View MSA
123424879 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.425     High  
cufflinks 34.156     High  
cufflinks 56.151     High  
cufflinks 41.751     High  
cufflinks 45.251     High  
cufflinks 43.835     High  
cufflinks 19.143     High Low
cufflinks 46.547     High  
cufflinks 45.453     High  
cufflinks 54.759     High  
cufflinks 40.454     High  
cufflinks 48.546     High  
cufflinks 74.775     High High
cufflinks 51.064     High  
cufflinks 30.48     High  
cufflinks 54.836     High  
cufflinks 74.763     High High
cufflinks 55.591     High  
cufflinks 10.023     High Low
cufflinks 48.735     High  
cufflinks 34.68     High  
cufflinks 58.411     High  
cufflinks 48.729     High  
cufflinks 52.256     High  
cufflinks 69.301     High High
cufflinks 187.361 0.0 380.761 High  
cufflinks 116.677 22.1448 211.209 High  
cufflinks 137.517 0.0 288.821 High  
cufflinks 60.0262 0.0 122.163 High  
cufflinks 89.9508 4.36133 175.54 High Low

0 Strain