Gene : Cre16.g689871 C. reinhardtii v5.6
Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  1277
Name:  ? Cre16.g689871 Secondary Identifier:  ? PAC:30777522
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g689871 0.5kb upstream 0.5kb upstream 9007 true chromosome_16: 7637216-7646222 Chlamydomonas reinhardtii
Cre16.g689871 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 7637216-7637715 Chlamydomonas reinhardtii
Cre16.g689871 0.5kb downstream 0.5kb downstream 9007 true chromosome_16: 7637716-7646722 Chlamydomonas reinhardtii
Cre16.g689871 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 7646223-7646722 Chlamydomonas reinhardtii
Cre16.g689871 1.0kb upstream 1.0kb upstream 9507 true chromosome_16: 7636716-7646222 Chlamydomonas reinhardtii
Cre16.g689871 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 7636716-7637715 Chlamydomonas reinhardtii
Cre16.g689871 1.0kb downstream 1.0kb downstream 9507 true chromosome_16: 7637716-7647222 Chlamydomonas reinhardtii
Cre16.g689871 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 7646223-7647222 Chlamydomonas reinhardtii
Cre16.g689871 2.0kb upstream 2.0kb upstream 10507 true chromosome_16: 7635716-7646222 Chlamydomonas reinhardtii
Cre16.g689871 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 7635716-7637715 Chlamydomonas reinhardtii
Cre16.g689871 2.0kb downstream 2.0kb downstream 10507 true chromosome_16: 7637716-7648222 Chlamydomonas reinhardtii
Cre16.g689871 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 7646223-7648222 Chlamydomonas reinhardtii
Cre16.g689871 5.0kb upstream 5.0kb upstream 13507 true chromosome_16: 7632716-7646222 Chlamydomonas reinhardtii
Cre16.g689871 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 7632716-7637715 Chlamydomonas reinhardtii
Cre16.g689871 5.0kb downstream 5.0kb downstream 13507 true chromosome_16: 7637716-7651222 Chlamydomonas reinhardtii
Cre16.g689871 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 7646223-7651222 Chlamydomonas reinhardtii
Cre16.g689871 10.0kb upstream 10.0kb upstream 18507 true chromosome_16: 7627716-7646222 Chlamydomonas reinhardtii
Cre16.g689871 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 7627716-7637715 Chlamydomonas reinhardtii
Cre16.g689871 10.0kb downstream 10.0kb downstream 18507 true chromosome_16: 7637716-7656222 Chlamydomonas reinhardtii
Cre16.g689871 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 7646223-7656222 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109303 5260 Chlorophyte View MSA
123424788 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.528        
cufflinks 4.829        
cufflinks 3.07        
cufflinks 4.231        
cufflinks 4.904        
cufflinks 4.327        
cufflinks 1.779       Low
cufflinks 4.404        
cufflinks 7.667        
cufflinks 0.91       Low
cufflinks 5.651        
cufflinks 5.499        
cufflinks 2.761        
cufflinks 4.921        
cufflinks 4.181        
cufflinks 9.946       High
cufflinks 6.845        
cufflinks 3.438        
cufflinks 0.409       Low
cufflinks 2.554        
cufflinks 4.095        
cufflinks 6.271        
cufflinks 2.932        
cufflinks 5.838        
cufflinks 7.188        
cufflinks 9.80049 0.903876 18.6971    
cufflinks 25.3601 6.19061 44.5295   High
cufflinks 5.53351 0.0 11.203    
cufflinks 5.18286 0.792571 9.57315    
cufflinks 7.62007 1.48718 13.753   Low

0 Strain