Gene : SQE1 C. reinhardtii v5.6
Primary Identifier:  ? Cre17.g734644 Defline:  (1 of 1) 1.14.13.132 - Squalene monooxygenase / Squalene epoxidase
Genomic Order:  866 Name:  ? Cre17.g734644
Secondary Identifier:  ? PAC:30782285
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PWY-5670 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre17.g734644 0.5kb upstream 0.5kb upstream 8322 true chromosome_17: 4958982-4967303 Chlamydomonas reinhardtii
Cre17.g734644 0.5kb upstream 0.5kb upstream 500 false chromosome_17: 4958982-4959481 Chlamydomonas reinhardtii
Cre17.g734644 0.5kb downstream 0.5kb downstream 8322 true chromosome_17: 4959482-4967803 Chlamydomonas reinhardtii
Cre17.g734644 0.5kb downstream 0.5kb downstream 500 false chromosome_17: 4967304-4967803 Chlamydomonas reinhardtii
Cre17.g734644 1.0kb upstream 1.0kb upstream 8822 true chromosome_17: 4958482-4967303 Chlamydomonas reinhardtii
Cre17.g734644 1.0kb upstream 1.0kb upstream 1000 false chromosome_17: 4958482-4959481 Chlamydomonas reinhardtii
Cre17.g734644 1.0kb downstream 1.0kb downstream 8822 true chromosome_17: 4959482-4968303 Chlamydomonas reinhardtii
Cre17.g734644 1.0kb downstream 1.0kb downstream 1000 false chromosome_17: 4967304-4968303 Chlamydomonas reinhardtii
Cre17.g734644 2.0kb upstream 2.0kb upstream 9822 true chromosome_17: 4957482-4967303 Chlamydomonas reinhardtii
Cre17.g734644 2.0kb upstream 2.0kb upstream 2000 false chromosome_17: 4957482-4959481 Chlamydomonas reinhardtii
Cre17.g734644 2.0kb downstream 2.0kb downstream 9822 true chromosome_17: 4959482-4969303 Chlamydomonas reinhardtii
Cre17.g734644 2.0kb downstream 2.0kb downstream 2000 false chromosome_17: 4967304-4969303 Chlamydomonas reinhardtii
Cre17.g734644 5.0kb upstream 5.0kb upstream 12822 true chromosome_17: 4954482-4967303 Chlamydomonas reinhardtii
Cre17.g734644 5.0kb upstream 5.0kb upstream 5000 false chromosome_17: 4954482-4959481 Chlamydomonas reinhardtii
Cre17.g734644 5.0kb downstream 5.0kb downstream 12822 true chromosome_17: 4959482-4972303 Chlamydomonas reinhardtii
Cre17.g734644 5.0kb downstream 5.0kb downstream 5000 false chromosome_17: 4967304-4972303 Chlamydomonas reinhardtii
Cre17.g734644 10.0kb upstream 10.0kb upstream 17822 true chromosome_17: 4949482-4967303 Chlamydomonas reinhardtii
Cre17.g734644 10.0kb upstream 10.0kb upstream 10000 false chromosome_17: 4949482-4959481 Chlamydomonas reinhardtii
Cre17.g734644 10.0kb downstream 10.0kb downstream 17822 true chromosome_17: 4959482-4977303 Chlamydomonas reinhardtii
Cre17.g734644 10.0kb downstream 10.0kb downstream 10000 false chromosome_17: 4967304-4977303 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109362 5260 Chlorophyte View MSA
123428498 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.743        
cufflinks 4.011        
cufflinks 6.345       High
cufflinks 4.771        
cufflinks 3.772        
cufflinks 4.624        
cufflinks 3.845        
cufflinks 4.969        
cufflinks 2.955        
cufflinks 3.484        
cufflinks 5.422        
cufflinks 4.166        
cufflinks 5.686       High
cufflinks 4.936        
cufflinks 2.909        
cufflinks 3.77        
cufflinks 3.358        
cufflinks 5.072        
cufflinks 1.176       Low
cufflinks 4.344        
cufflinks 3.85        
cufflinks 2.557       Low
cufflinks 2.977        
cufflinks 6.547       High
cufflinks 3.388        
cufflinks 82.3562 0.0 168.954 High High
cufflinks 17.4102 4.6207 30.1996    
cufflinks 14.5908 0.0 29.3849    
cufflinks 18.5714 0.905405 36.2374   Low
cufflinks 22.3231 3.34457 41.3017    

0 Strain