Gene : TSM1 C. reinhardtii v5.6
Primary Identifier:  ? Cre02.g087950 Defline:  (1 of 1) PTHR11946//PTHR11946:SF86 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONINE--TRNA LIGASE, CYTOPLASMIC
Genomic Order:  339 Name:  ? Cre02.g087950
Secondary Identifier:  ? PAC:30785739
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre02.g087950 0.5kb upstream 0.5kb upstream 11766 true chromosome_2: 1941058-1952823 Chlamydomonas reinhardtii
Cre02.g087950 0.5kb upstream 0.5kb upstream 500 false chromosome_2: 1952324-1952823 Chlamydomonas reinhardtii
Cre02.g087950 0.5kb downstream 0.5kb downstream 11766 true chromosome_2: 1940558-1952323 Chlamydomonas reinhardtii
Cre02.g087950 0.5kb downstream 0.5kb downstream 500 false chromosome_2: 1940558-1941057 Chlamydomonas reinhardtii
Cre02.g087950 1.0kb upstream 1.0kb upstream 12266 true chromosome_2: 1941058-1953323 Chlamydomonas reinhardtii
Cre02.g087950 1.0kb upstream 1.0kb upstream 1000 false chromosome_2: 1952324-1953323 Chlamydomonas reinhardtii
Cre02.g087950 1.0kb downstream 1.0kb downstream 12266 true chromosome_2: 1940058-1952323 Chlamydomonas reinhardtii
Cre02.g087950 1.0kb downstream 1.0kb downstream 1000 false chromosome_2: 1940058-1941057 Chlamydomonas reinhardtii
Cre02.g087950 2.0kb upstream 2.0kb upstream 13266 true chromosome_2: 1941058-1954323 Chlamydomonas reinhardtii
Cre02.g087950 2.0kb upstream 2.0kb upstream 2000 false chromosome_2: 1952324-1954323 Chlamydomonas reinhardtii
Cre02.g087950 2.0kb downstream 2.0kb downstream 13266 true chromosome_2: 1939058-1952323 Chlamydomonas reinhardtii
Cre02.g087950 2.0kb downstream 2.0kb downstream 2000 false chromosome_2: 1939058-1941057 Chlamydomonas reinhardtii
Cre02.g087950 5.0kb upstream 5.0kb upstream 16266 true chromosome_2: 1941058-1957323 Chlamydomonas reinhardtii
Cre02.g087950 5.0kb upstream 5.0kb upstream 5000 false chromosome_2: 1952324-1957323 Chlamydomonas reinhardtii
Cre02.g087950 5.0kb downstream 5.0kb downstream 16266 true chromosome_2: 1936058-1952323 Chlamydomonas reinhardtii
Cre02.g087950 5.0kb downstream 5.0kb downstream 5000 false chromosome_2: 1936058-1941057 Chlamydomonas reinhardtii
Cre02.g087950 10.0kb upstream 10.0kb upstream 21266 true chromosome_2: 1941058-1962323 Chlamydomonas reinhardtii
Cre02.g087950 10.0kb upstream 10.0kb upstream 10000 false chromosome_2: 1952324-1962323 Chlamydomonas reinhardtii
Cre02.g087950 10.0kb downstream 10.0kb downstream 21266 true chromosome_2: 1931058-1952323 Chlamydomonas reinhardtii
Cre02.g087950 10.0kb downstream 10.0kb downstream 10000 false chromosome_2: 1931058-1941057 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124112072 5260 Chlorophyte View MSA
123428788 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.767        
cufflinks 5.265        
cufflinks 4.759        
cufflinks 3.976        
cufflinks 5.206        
cufflinks 4.619        
cufflinks 3.508        
cufflinks 4.171        
cufflinks 3.765        
cufflinks 1.002       Low
cufflinks 4.742        
cufflinks 3.803        
cufflinks 2.159        
cufflinks 4.705        
cufflinks 2.901        
cufflinks 5.636       High
cufflinks 1.844        
cufflinks 4.79        
cufflinks 0.528       Low
cufflinks 2.529        
cufflinks 3.592        
cufflinks 1.947        
cufflinks 3.047        
cufflinks 4.448        
cufflinks 1.927        
cufflinks 52.2539 0.0 107.079 High Low
cufflinks 33.5606 7.49117 59.63 High  
cufflinks 3.93442 0.0 8.0556   Low
cufflinks 15.2808 0.599917 29.9617   Low
cufflinks 30.7638 2.97741 58.5501 High High

0 Strain