Gene : Cre02.g073950 C. reinhardtii v5.6

Defline:  (1 of 3) 1.13.11.69//1.13.11.70 - Carlactone synthase // All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  19
Name:  ? Cre02.g073950 Secondary Identifier:  ? PAC:30785458

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PWY-7101 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre02.g073950 0.5kb upstream 0.5kb upstream 5172 true chromosome_2: 94996-100167 Chlamydomonas reinhardtii
Cre02.g073950 0.5kb upstream 0.5kb upstream 500 false chromosome_2: 94996-95495 Chlamydomonas reinhardtii
Cre02.g073950 0.5kb downstream 0.5kb downstream 5172 true chromosome_2: 95496-100667 Chlamydomonas reinhardtii
Cre02.g073950 0.5kb downstream 0.5kb downstream 500 false chromosome_2: 100168-100667 Chlamydomonas reinhardtii
Cre02.g073950 1.0kb upstream 1.0kb upstream 5672 true chromosome_2: 94496-100167 Chlamydomonas reinhardtii
Cre02.g073950 1.0kb upstream 1.0kb upstream 1000 false chromosome_2: 94496-95495 Chlamydomonas reinhardtii
Cre02.g073950 1.0kb downstream 1.0kb downstream 5672 true chromosome_2: 95496-101167 Chlamydomonas reinhardtii
Cre02.g073950 1.0kb downstream 1.0kb downstream 1000 false chromosome_2: 100168-101167 Chlamydomonas reinhardtii
Cre02.g073950 2.0kb upstream 2.0kb upstream 6672 true chromosome_2: 93496-100167 Chlamydomonas reinhardtii
Cre02.g073950 2.0kb upstream 2.0kb upstream 2000 false chromosome_2: 93496-95495 Chlamydomonas reinhardtii
Cre02.g073950 2.0kb downstream 2.0kb downstream 6672 true chromosome_2: 95496-102167 Chlamydomonas reinhardtii
Cre02.g073950 2.0kb downstream 2.0kb downstream 2000 false chromosome_2: 100168-102167 Chlamydomonas reinhardtii
Cre02.g073950 5.0kb upstream 5.0kb upstream 9672 true chromosome_2: 90496-100167 Chlamydomonas reinhardtii
Cre02.g073950 5.0kb upstream 5.0kb upstream 5000 false chromosome_2: 90496-95495 Chlamydomonas reinhardtii
Cre02.g073950 5.0kb downstream 5.0kb downstream 9672 true chromosome_2: 95496-105167 Chlamydomonas reinhardtii
Cre02.g073950 5.0kb downstream 5.0kb downstream 5000 false chromosome_2: 100168-105167 Chlamydomonas reinhardtii
Cre02.g073950 10.0kb upstream 10.0kb upstream 14672 true chromosome_2: 85496-100167 Chlamydomonas reinhardtii
Cre02.g073950 10.0kb upstream 10.0kb upstream 10000 false chromosome_2: 85496-95495 Chlamydomonas reinhardtii
Cre02.g073950 10.0kb downstream 10.0kb downstream 14672 true chromosome_2: 95496-110167 Chlamydomonas reinhardtii
Cre02.g073950 10.0kb downstream 10.0kb downstream 10000 false chromosome_2: 100168-110167 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124098257 5260 Chlorophyte View MSA
123428919 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.108        
cufflinks 0.146        
cufflinks 0.139     Low  
cufflinks 0.149     Low  
cufflinks 0.146     Low  
cufflinks 0.116     Low  
cufflinks 0.174        
cufflinks 0.064     Low Low
cufflinks 0.238        
cufflinks 0.104        
cufflinks 0.159     Low  
cufflinks 0.291       High
cufflinks 0.191        
cufflinks 0.267       High
cufflinks 0.196        
cufflinks 0.301       High
cufflinks 0.207        
cufflinks 0.189        
cufflinks 0.04     Low Low
cufflinks 0.239        
cufflinks 0.197        
cufflinks 0.121        
cufflinks 0.219        
cufflinks 0.322       High
cufflinks 0.203        
cufflinks 1.13506 0.0 2.30418   High
cufflinks 2.10454 0.0 4.38212   High
cufflinks 0.238033 0.0 0.798219 Low  
cufflinks 0.913528 0.0 1.88215    
cufflinks 1.81709 0.0 3.64848    

0 Strain