Gene : PUS3 C. reinhardtii v5.6
Primary Identifier:  ? Cre02.g078750 Defline:  (1 of 1) K15452 - tRNA pseudouridine synthase 2 [EC:5.4.99.-] (PUS2)
Genomic Order:  133 Name:  ? Cre02.g078750
Secondary Identifier:  ? PAC:30785017
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre02.g078750 0.5kb upstream 0.5kb upstream 5492 true chromosome_2: 765608-771099 Chlamydomonas reinhardtii
Cre02.g078750 0.5kb upstream 0.5kb upstream 500 false chromosome_2: 765608-766107 Chlamydomonas reinhardtii
Cre02.g078750 0.5kb downstream 0.5kb downstream 5492 true chromosome_2: 766108-771599 Chlamydomonas reinhardtii
Cre02.g078750 0.5kb downstream 0.5kb downstream 500 false chromosome_2: 771100-771599 Chlamydomonas reinhardtii
Cre02.g078750 1.0kb upstream 1.0kb upstream 5992 true chromosome_2: 765108-771099 Chlamydomonas reinhardtii
Cre02.g078750 1.0kb upstream 1.0kb upstream 1000 false chromosome_2: 765108-766107 Chlamydomonas reinhardtii
Cre02.g078750 1.0kb downstream 1.0kb downstream 5992 true chromosome_2: 766108-772099 Chlamydomonas reinhardtii
Cre02.g078750 1.0kb downstream 1.0kb downstream 1000 false chromosome_2: 771100-772099 Chlamydomonas reinhardtii
Cre02.g078750 2.0kb upstream 2.0kb upstream 6992 true chromosome_2: 764108-771099 Chlamydomonas reinhardtii
Cre02.g078750 2.0kb upstream 2.0kb upstream 2000 false chromosome_2: 764108-766107 Chlamydomonas reinhardtii
Cre02.g078750 2.0kb downstream 2.0kb downstream 6992 true chromosome_2: 766108-773099 Chlamydomonas reinhardtii
Cre02.g078750 2.0kb downstream 2.0kb downstream 2000 false chromosome_2: 771100-773099 Chlamydomonas reinhardtii
Cre02.g078750 5.0kb upstream 5.0kb upstream 9992 true chromosome_2: 761108-771099 Chlamydomonas reinhardtii
Cre02.g078750 5.0kb upstream 5.0kb upstream 5000 false chromosome_2: 761108-766107 Chlamydomonas reinhardtii
Cre02.g078750 5.0kb downstream 5.0kb downstream 9992 true chromosome_2: 766108-776099 Chlamydomonas reinhardtii
Cre02.g078750 5.0kb downstream 5.0kb downstream 5000 false chromosome_2: 771100-776099 Chlamydomonas reinhardtii
Cre02.g078750 10.0kb upstream 10.0kb upstream 14992 true chromosome_2: 756108-771099 Chlamydomonas reinhardtii
Cre02.g078750 10.0kb upstream 10.0kb upstream 10000 false chromosome_2: 756108-766107 Chlamydomonas reinhardtii
Cre02.g078750 10.0kb downstream 10.0kb downstream 14992 true chromosome_2: 766108-781099 Chlamydomonas reinhardtii
Cre02.g078750 10.0kb downstream 10.0kb downstream 10000 false chromosome_2: 771100-781099 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113448 5260 Chlorophyte View MSA
123426669 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.18        
cufflinks 1.264        
cufflinks 1.325        
cufflinks 0.96        
cufflinks 1.089        
cufflinks 1.271        
cufflinks 1.382        
cufflinks 1.066        
cufflinks 1.626        
cufflinks 1.534        
cufflinks 0.765       Low
cufflinks 1.399        
cufflinks 1.387        
cufflinks 1.797       High
cufflinks 1.514        
cufflinks 0.881       Low
cufflinks 2.064       High
cufflinks 1.497        
cufflinks 0.429       Low
cufflinks 1.83       High
cufflinks 1.206        
cufflinks 1.397        
cufflinks 0.968        
cufflinks 1.979       High
cufflinks 1.175        
cufflinks 2.44565 0.264833 4.62647    
cufflinks 3.28184 0.361086 6.20259    
cufflinks 0.562517 0.0 1.52076   Low
cufflinks 2.50495 0.282547 4.72735    
cufflinks 4.06411 0.553703 7.57452   High

0 Strain