Gene : Cre03.g145727 C. reinhardtii v5.6
Defline:  (1 of 1) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  102
Name:  ? Cre03.g145727 Secondary Identifier:  ? PAC:30788166
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre03.g145727 0.5kb upstream 0.5kb upstream 6132 true chromosome_3: 622448-628579 Chlamydomonas reinhardtii
Cre03.g145727 0.5kb upstream 0.5kb upstream 500 false chromosome_3: 622448-622947 Chlamydomonas reinhardtii
Cre03.g145727 0.5kb downstream 0.5kb downstream 6132 true chromosome_3: 622948-629079 Chlamydomonas reinhardtii
Cre03.g145727 0.5kb downstream 0.5kb downstream 500 false chromosome_3: 628580-629079 Chlamydomonas reinhardtii
Cre03.g145727 1.0kb upstream 1.0kb upstream 6632 true chromosome_3: 621948-628579 Chlamydomonas reinhardtii
Cre03.g145727 1.0kb upstream 1.0kb upstream 1000 false chromosome_3: 621948-622947 Chlamydomonas reinhardtii
Cre03.g145727 1.0kb downstream 1.0kb downstream 6632 true chromosome_3: 622948-629579 Chlamydomonas reinhardtii
Cre03.g145727 1.0kb downstream 1.0kb downstream 1000 false chromosome_3: 628580-629579 Chlamydomonas reinhardtii
Cre03.g145727 2.0kb upstream 2.0kb upstream 7632 true chromosome_3: 620948-628579 Chlamydomonas reinhardtii
Cre03.g145727 2.0kb upstream 2.0kb upstream 2000 false chromosome_3: 620948-622947 Chlamydomonas reinhardtii
Cre03.g145727 2.0kb downstream 2.0kb downstream 7632 true chromosome_3: 622948-630579 Chlamydomonas reinhardtii
Cre03.g145727 2.0kb downstream 2.0kb downstream 2000 false chromosome_3: 628580-630579 Chlamydomonas reinhardtii
Cre03.g145727 5.0kb upstream 5.0kb upstream 10632 true chromosome_3: 617948-628579 Chlamydomonas reinhardtii
Cre03.g145727 5.0kb upstream 5.0kb upstream 5000 false chromosome_3: 617948-622947 Chlamydomonas reinhardtii
Cre03.g145727 5.0kb downstream 5.0kb downstream 10632 true chromosome_3: 622948-633579 Chlamydomonas reinhardtii
Cre03.g145727 5.0kb downstream 5.0kb downstream 5000 false chromosome_3: 628580-633579 Chlamydomonas reinhardtii
Cre03.g145727 10.0kb upstream 10.0kb upstream 15632 true chromosome_3: 612948-628579 Chlamydomonas reinhardtii
Cre03.g145727 10.0kb upstream 10.0kb upstream 10000 false chromosome_3: 612948-622947 Chlamydomonas reinhardtii
Cre03.g145727 10.0kb downstream 10.0kb downstream 15632 true chromosome_3: 622948-638579 Chlamydomonas reinhardtii
Cre03.g145727 10.0kb downstream 10.0kb downstream 10000 false chromosome_3: 628580-638579 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108408 5260 Chlorophyte View MSA
123424631 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.663     High  
cufflinks 15.019     High  
cufflinks 5.053        
cufflinks 5.273        
cufflinks 14.694     High  
cufflinks 13.145     High  
cufflinks 11.036        
cufflinks 10.417        
cufflinks 17.421     High High
cufflinks 2.345       Low
cufflinks 4.341       Low
cufflinks 11.238        
cufflinks 5.791        
cufflinks 13.517     High  
cufflinks 7.249        
cufflinks 28.312     High High
cufflinks 9.269        
cufflinks 6.512        
cufflinks 1.65       Low
cufflinks 7.038        
cufflinks 8.502        
cufflinks 10.42        
cufflinks 8.347        
cufflinks 9.687        
cufflinks 9.712        
cufflinks 45.0289 0.0 91.267 High Low
cufflinks 55.776 11.2095 100.342 High  
cufflinks 1.97989 0.0 4.41093   Low
cufflinks 18.7704 1.0235 36.5174   Low
cufflinks 44.3433 4.21386 84.4727 High High

0 Strain