Gene : CIS2 C. reinhardtii v5.6
Primary Identifier:  ? Cre03.g149100 Defline:  (1 of 1) PTHR11739:SF4 - CITRATE SYNTHASE, PEROXISOMAL
Genomic Order:  180 Name:  ? Cre03.g149100
Secondary Identifier:  ? PAC:30787831
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii GLYOXYLATE-BYPASS Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5464 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-561 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5690 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-6549 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre03.g149100 0.5kb upstream 0.5kb upstream 5533 true chromosome_3: 1129580-1135112 Chlamydomonas reinhardtii
Cre03.g149100 0.5kb upstream 0.5kb upstream 500 false chromosome_3: 1134613-1135112 Chlamydomonas reinhardtii
Cre03.g149100 0.5kb downstream 0.5kb downstream 5533 true chromosome_3: 1129080-1134612 Chlamydomonas reinhardtii
Cre03.g149100 0.5kb downstream 0.5kb downstream 500 false chromosome_3: 1129080-1129579 Chlamydomonas reinhardtii
Cre03.g149100 1.0kb upstream 1.0kb upstream 6033 true chromosome_3: 1129580-1135612 Chlamydomonas reinhardtii
Cre03.g149100 1.0kb upstream 1.0kb upstream 1000 false chromosome_3: 1134613-1135612 Chlamydomonas reinhardtii
Cre03.g149100 1.0kb downstream 1.0kb downstream 6033 true chromosome_3: 1128580-1134612 Chlamydomonas reinhardtii
Cre03.g149100 1.0kb downstream 1.0kb downstream 1000 false chromosome_3: 1128580-1129579 Chlamydomonas reinhardtii
Cre03.g149100 2.0kb upstream 2.0kb upstream 7033 true chromosome_3: 1129580-1136612 Chlamydomonas reinhardtii
Cre03.g149100 2.0kb upstream 2.0kb upstream 2000 false chromosome_3: 1134613-1136612 Chlamydomonas reinhardtii
Cre03.g149100 2.0kb downstream 2.0kb downstream 7033 true chromosome_3: 1127580-1134612 Chlamydomonas reinhardtii
Cre03.g149100 2.0kb downstream 2.0kb downstream 2000 false chromosome_3: 1127580-1129579 Chlamydomonas reinhardtii
Cre03.g149100 5.0kb upstream 5.0kb upstream 10033 true chromosome_3: 1129580-1139612 Chlamydomonas reinhardtii
Cre03.g149100 5.0kb upstream 5.0kb upstream 5000 false chromosome_3: 1134613-1139612 Chlamydomonas reinhardtii
Cre03.g149100 5.0kb downstream 5.0kb downstream 10033 true chromosome_3: 1124580-1134612 Chlamydomonas reinhardtii
Cre03.g149100 5.0kb downstream 5.0kb downstream 5000 false chromosome_3: 1124580-1129579 Chlamydomonas reinhardtii
Cre03.g149100 10.0kb upstream 10.0kb upstream 15033 true chromosome_3: 1129580-1144612 Chlamydomonas reinhardtii
Cre03.g149100 10.0kb upstream 10.0kb upstream 10000 false chromosome_3: 1134613-1144612 Chlamydomonas reinhardtii
Cre03.g149100 10.0kb downstream 10.0kb downstream 15033 true chromosome_3: 1119580-1134612 Chlamydomonas reinhardtii
Cre03.g149100 10.0kb downstream 10.0kb downstream 10000 false chromosome_3: 1119580-1129579 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109336 5260 Chlorophyte View MSA
123424100 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 72.677     High  
cufflinks 179.332     High High
cufflinks 149.146     High High
cufflinks 74.494     High  
cufflinks 157.338     High High
cufflinks 124.541     High  
cufflinks 120.116     High  
cufflinks 27.7     High  
cufflinks 75.656     High  
cufflinks 34.535     High  
cufflinks 122.789     High  
cufflinks 28.647     High  
cufflinks 40.844     High  
cufflinks 137.871     High High
cufflinks 44.116     High  
cufflinks 77.138     High  
cufflinks 26.342     High  
cufflinks 103.48     High  
cufflinks 3.736       Low
cufflinks 23.632     High  
cufflinks 43.952     High  
cufflinks 18.476     High Low
cufflinks 16.497     High Low
cufflinks 50.308     High  
cufflinks 16.524     High Low
cufflinks 171.164 0.0 346.581 High  
cufflinks 310.271 31.1142 589.429 High  
cufflinks 109.362 0.0 229.801 High  
cufflinks 357.444 21.3374 693.55 High  
cufflinks 325.262 4.58079 645.943 High  

0 Strain