Gene : TSC1 C. reinhardtii v5.6
Primary Identifier:  ? Cre03.g169850 Defline:  (1 of 1) PTHR10890//PTHR10890:SF3 - CYSTEINYL-TRNA SYNTHETASE // CYSTEINE--TRNA LIGASE, CYTOPLASMIC
Genomic Order:  632 Name:  ? Cre03.g169850
Secondary Identifier:  ? PAC:30787939
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre03.g169850 0.5kb upstream 0.5kb upstream 9316 true chromosome_3: 3744811-3754126 Chlamydomonas reinhardtii
Cre03.g169850 0.5kb upstream 0.5kb upstream 500 false chromosome_3: 3753627-3754126 Chlamydomonas reinhardtii
Cre03.g169850 0.5kb downstream 0.5kb downstream 9316 true chromosome_3: 3744311-3753626 Chlamydomonas reinhardtii
Cre03.g169850 0.5kb downstream 0.5kb downstream 500 false chromosome_3: 3744311-3744810 Chlamydomonas reinhardtii
Cre03.g169850 1.0kb upstream 1.0kb upstream 9816 true chromosome_3: 3744811-3754626 Chlamydomonas reinhardtii
Cre03.g169850 1.0kb upstream 1.0kb upstream 1000 false chromosome_3: 3753627-3754626 Chlamydomonas reinhardtii
Cre03.g169850 1.0kb downstream 1.0kb downstream 9816 true chromosome_3: 3743811-3753626 Chlamydomonas reinhardtii
Cre03.g169850 1.0kb downstream 1.0kb downstream 1000 false chromosome_3: 3743811-3744810 Chlamydomonas reinhardtii
Cre03.g169850 2.0kb upstream 2.0kb upstream 10816 true chromosome_3: 3744811-3755626 Chlamydomonas reinhardtii
Cre03.g169850 2.0kb upstream 2.0kb upstream 2000 false chromosome_3: 3753627-3755626 Chlamydomonas reinhardtii
Cre03.g169850 2.0kb downstream 2.0kb downstream 10816 true chromosome_3: 3742811-3753626 Chlamydomonas reinhardtii
Cre03.g169850 2.0kb downstream 2.0kb downstream 2000 false chromosome_3: 3742811-3744810 Chlamydomonas reinhardtii
Cre03.g169850 5.0kb upstream 5.0kb upstream 13816 true chromosome_3: 3744811-3758626 Chlamydomonas reinhardtii
Cre03.g169850 5.0kb upstream 5.0kb upstream 5000 false chromosome_3: 3753627-3758626 Chlamydomonas reinhardtii
Cre03.g169850 5.0kb downstream 5.0kb downstream 13816 true chromosome_3: 3739811-3753626 Chlamydomonas reinhardtii
Cre03.g169850 5.0kb downstream 5.0kb downstream 5000 false chromosome_3: 3739811-3744810 Chlamydomonas reinhardtii
Cre03.g169850 10.0kb upstream 10.0kb upstream 18816 true chromosome_3: 3744811-3763626 Chlamydomonas reinhardtii
Cre03.g169850 10.0kb upstream 10.0kb upstream 10000 false chromosome_3: 3753627-3763626 Chlamydomonas reinhardtii
Cre03.g169850 10.0kb downstream 10.0kb downstream 18816 true chromosome_3: 3734811-3753626 Chlamydomonas reinhardtii
Cre03.g169850 10.0kb downstream 10.0kb downstream 10000 false chromosome_3: 3734811-3744810 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108607 5260 Chlorophyte View MSA
123427761 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.699        
cufflinks 4.28        
cufflinks 2.039        
cufflinks 2.915        
cufflinks 4.111        
cufflinks 3.368        
cufflinks 3.848        
cufflinks 3.229        
cufflinks 4.011        
cufflinks 0.898       Low
cufflinks 3.003        
cufflinks 4.155        
cufflinks 0.908       Low
cufflinks 3.44        
cufflinks 3.025        
cufflinks 4.84       High
cufflinks 2.247        
cufflinks 2.268        
cufflinks 0.747       Low
cufflinks 2.344        
cufflinks 3.392        
cufflinks 2.737        
cufflinks 3.021        
cufflinks 3.445        
cufflinks 2.874        
cufflinks 26.2805 0.0 53.0173   High
cufflinks 17.741 4.55804 30.9239   High
cufflinks 2.09708 0.0 4.48113   Low
cufflinks 6.36798 0.777526 11.9584   Low
cufflinks 15.2981 2.42165 28.1745   High

0 Strain