Gene : Cre03.g173450 C. reinhardtii v5.6
Defline:  (1 of 8) 1.14.12.20 - Pheophorbide a oxygenase / Pheide a oxygenase Genomic Order:  712
Name:  ? Cre03.g173450 Secondary Identifier:  ? PAC:30787929
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PWY-6927 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre03.g173450 0.5kb upstream 0.5kb upstream 5526 true chromosome_3: 4137450-4142975 Chlamydomonas reinhardtii
Cre03.g173450 0.5kb upstream 0.5kb upstream 500 false chromosome_3: 4142476-4142975 Chlamydomonas reinhardtii
Cre03.g173450 0.5kb downstream 0.5kb downstream 5526 true chromosome_3: 4136950-4142475 Chlamydomonas reinhardtii
Cre03.g173450 0.5kb downstream 0.5kb downstream 500 false chromosome_3: 4136950-4137449 Chlamydomonas reinhardtii
Cre03.g173450 1.0kb upstream 1.0kb upstream 6026 true chromosome_3: 4137450-4143475 Chlamydomonas reinhardtii
Cre03.g173450 1.0kb upstream 1.0kb upstream 1000 false chromosome_3: 4142476-4143475 Chlamydomonas reinhardtii
Cre03.g173450 1.0kb downstream 1.0kb downstream 6026 true chromosome_3: 4136450-4142475 Chlamydomonas reinhardtii
Cre03.g173450 1.0kb downstream 1.0kb downstream 1000 false chromosome_3: 4136450-4137449 Chlamydomonas reinhardtii
Cre03.g173450 2.0kb upstream 2.0kb upstream 7026 true chromosome_3: 4137450-4144475 Chlamydomonas reinhardtii
Cre03.g173450 2.0kb upstream 2.0kb upstream 2000 false chromosome_3: 4142476-4144475 Chlamydomonas reinhardtii
Cre03.g173450 2.0kb downstream 2.0kb downstream 7026 true chromosome_3: 4135450-4142475 Chlamydomonas reinhardtii
Cre03.g173450 2.0kb downstream 2.0kb downstream 2000 false chromosome_3: 4135450-4137449 Chlamydomonas reinhardtii
Cre03.g173450 5.0kb upstream 5.0kb upstream 10026 true chromosome_3: 4137450-4147475 Chlamydomonas reinhardtii
Cre03.g173450 5.0kb upstream 5.0kb upstream 5000 false chromosome_3: 4142476-4147475 Chlamydomonas reinhardtii
Cre03.g173450 5.0kb downstream 5.0kb downstream 10026 true chromosome_3: 4132450-4142475 Chlamydomonas reinhardtii
Cre03.g173450 5.0kb downstream 5.0kb downstream 5000 false chromosome_3: 4132450-4137449 Chlamydomonas reinhardtii
Cre03.g173450 10.0kb upstream 10.0kb upstream 15026 true chromosome_3: 4137450-4152475 Chlamydomonas reinhardtii
Cre03.g173450 10.0kb upstream 10.0kb upstream 10000 false chromosome_3: 4142476-4152475 Chlamydomonas reinhardtii
Cre03.g173450 10.0kb downstream 10.0kb downstream 15026 true chromosome_3: 4127450-4142475 Chlamydomonas reinhardtii
Cre03.g173450 10.0kb downstream 10.0kb downstream 10000 false chromosome_3: 4127450-4137449 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110228 5260 Chlorophyte View MSA
123429167 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.587       Low
cufflinks 1.116        
cufflinks 0.475       Low
cufflinks 1.224        
cufflinks 1.344        
cufflinks 1.211        
cufflinks 1.309        
cufflinks 1.76        
cufflinks 0.867        
cufflinks 0.47       Low
cufflinks 0.641       Low
cufflinks 2.428       High
cufflinks 0.672        
cufflinks 1.393        
cufflinks 1.257        
cufflinks 1.592        
cufflinks 2.992       High
cufflinks 0.885        
cufflinks 0.481       Low
cufflinks 2.684       High
cufflinks 1.204        
cufflinks 1.904        
cufflinks 0.699        
cufflinks 2.001        
cufflinks 2.31       High
cufflinks 2.37755 0.299796 4.45529    
cufflinks 3.19084 0.490068 5.89161    
cufflinks 3.13591 0.0 6.60151    
cufflinks 2.40233 0.309291 4.49536    
cufflinks 2.03784 0.191301 3.88437   Low

0 Strain