Gene : VPS46 C. reinhardtii v5.6
Primary Identifier:  ? Cre03.g188500 Defline:  (1 of 1) K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2)
Genomic Order:  1031 Name:  ? Cre03.g188500
Secondary Identifier:  ? PAC:30787941
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre03.g188500 0.5kb upstream 0.5kb upstream 3292 true chromosome_3: 5760916-5764207 Chlamydomonas reinhardtii
Cre03.g188500 0.5kb upstream 0.5kb upstream 500 false chromosome_3: 5760916-5761415 Chlamydomonas reinhardtii
Cre03.g188500 0.5kb downstream 0.5kb downstream 3292 true chromosome_3: 5761416-5764707 Chlamydomonas reinhardtii
Cre03.g188500 0.5kb downstream 0.5kb downstream 500 false chromosome_3: 5764208-5764707 Chlamydomonas reinhardtii
Cre03.g188500 1.0kb upstream 1.0kb upstream 3792 true chromosome_3: 5760416-5764207 Chlamydomonas reinhardtii
Cre03.g188500 1.0kb upstream 1.0kb upstream 1000 false chromosome_3: 5760416-5761415 Chlamydomonas reinhardtii
Cre03.g188500 1.0kb downstream 1.0kb downstream 3792 true chromosome_3: 5761416-5765207 Chlamydomonas reinhardtii
Cre03.g188500 1.0kb downstream 1.0kb downstream 1000 false chromosome_3: 5764208-5765207 Chlamydomonas reinhardtii
Cre03.g188500 2.0kb upstream 2.0kb upstream 4792 true chromosome_3: 5759416-5764207 Chlamydomonas reinhardtii
Cre03.g188500 2.0kb upstream 2.0kb upstream 2000 false chromosome_3: 5759416-5761415 Chlamydomonas reinhardtii
Cre03.g188500 2.0kb downstream 2.0kb downstream 4792 true chromosome_3: 5761416-5766207 Chlamydomonas reinhardtii
Cre03.g188500 2.0kb downstream 2.0kb downstream 2000 false chromosome_3: 5764208-5766207 Chlamydomonas reinhardtii
Cre03.g188500 5.0kb upstream 5.0kb upstream 7792 true chromosome_3: 5756416-5764207 Chlamydomonas reinhardtii
Cre03.g188500 5.0kb upstream 5.0kb upstream 5000 false chromosome_3: 5756416-5761415 Chlamydomonas reinhardtii
Cre03.g188500 5.0kb downstream 5.0kb downstream 7792 true chromosome_3: 5761416-5769207 Chlamydomonas reinhardtii
Cre03.g188500 5.0kb downstream 5.0kb downstream 5000 false chromosome_3: 5764208-5769207 Chlamydomonas reinhardtii
Cre03.g188500 10.0kb upstream 10.0kb upstream 12792 true chromosome_3: 5751416-5764207 Chlamydomonas reinhardtii
Cre03.g188500 10.0kb upstream 10.0kb upstream 10000 false chromosome_3: 5751416-5761415 Chlamydomonas reinhardtii
Cre03.g188500 10.0kb downstream 10.0kb downstream 12792 true chromosome_3: 5761416-5774207 Chlamydomonas reinhardtii
Cre03.g188500 10.0kb downstream 10.0kb downstream 10000 false chromosome_3: 5764208-5774207 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110508 5260 Chlorophyte View MSA
123427092 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.466     High  
cufflinks 19.788     High  
cufflinks 32.903     High High
cufflinks 23.139     High  
cufflinks 22.891     High  
cufflinks 20.644     High  
cufflinks 19.137     High  
cufflinks 21.236     High  
cufflinks 20.034     High  
cufflinks 64.155     High High
cufflinks 14.254     High Low
cufflinks 18.261     High  
cufflinks 37.357     High High
cufflinks 25.277     High  
cufflinks 14.305     High Low
cufflinks 16.721     High  
cufflinks 14.476     High  
cufflinks 46.834     High High
cufflinks 21.77     High  
cufflinks 22.947     High  
cufflinks 15.355     High  
cufflinks 12.336     High Low
cufflinks 23.312     High  
cufflinks 19.138     High  
cufflinks 12.814     High Low
cufflinks 55.771 0.0 112.873 High High
cufflinks 33.0355 8.50687 57.5642 High  
cufflinks 19.4731 0.0 39.2396   Low
cufflinks 15.3533 1.54941 29.1572   Low
cufflinks 23.5705 4.13658 43.0045    

0 Strain