Gene : Cre06.g296400 C. reinhardtii v5.6
Defline:  (1 of 1) 1.3.8.4 - Isovaleryl-CoA dehydrogenase Genomic Order:  1241
Name:  ? Cre06.g296400 Secondary Identifier:  ? PAC:30778744
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii LEU-DEG2-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g296400 0.5kb upstream 0.5kb upstream 6136 true chromosome_6: 6966071-6972206 Chlamydomonas reinhardtii
Cre06.g296400 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 6971707-6972206 Chlamydomonas reinhardtii
Cre06.g296400 0.5kb downstream 0.5kb downstream 6136 true chromosome_6: 6965571-6971706 Chlamydomonas reinhardtii
Cre06.g296400 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 6965571-6966070 Chlamydomonas reinhardtii
Cre06.g296400 1.0kb upstream 1.0kb upstream 6636 true chromosome_6: 6966071-6972706 Chlamydomonas reinhardtii
Cre06.g296400 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 6971707-6972706 Chlamydomonas reinhardtii
Cre06.g296400 1.0kb downstream 1.0kb downstream 6636 true chromosome_6: 6965071-6971706 Chlamydomonas reinhardtii
Cre06.g296400 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 6965071-6966070 Chlamydomonas reinhardtii
Cre06.g296400 2.0kb upstream 2.0kb upstream 7636 true chromosome_6: 6966071-6973706 Chlamydomonas reinhardtii
Cre06.g296400 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 6971707-6973706 Chlamydomonas reinhardtii
Cre06.g296400 2.0kb downstream 2.0kb downstream 7636 true chromosome_6: 6964071-6971706 Chlamydomonas reinhardtii
Cre06.g296400 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 6964071-6966070 Chlamydomonas reinhardtii
Cre06.g296400 5.0kb upstream 5.0kb upstream 10636 true chromosome_6: 6966071-6976706 Chlamydomonas reinhardtii
Cre06.g296400 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 6971707-6976706 Chlamydomonas reinhardtii
Cre06.g296400 5.0kb downstream 5.0kb downstream 10636 true chromosome_6: 6961071-6971706 Chlamydomonas reinhardtii
Cre06.g296400 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 6961071-6966070 Chlamydomonas reinhardtii
Cre06.g296400 10.0kb upstream 10.0kb upstream 15636 true chromosome_6: 6966071-6981706 Chlamydomonas reinhardtii
Cre06.g296400 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 6971707-6981706 Chlamydomonas reinhardtii
Cre06.g296400 10.0kb downstream 10.0kb downstream 15636 true chromosome_6: 6956071-6971706 Chlamydomonas reinhardtii
Cre06.g296400 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 6956071-6966070 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111596 5260 Chlorophyte View MSA
123427095 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.137        
cufflinks 3.941        
cufflinks 8.668        
cufflinks 13.158        
cufflinks 3.49       Low
cufflinks 3.783        
cufflinks 5.685        
cufflinks 11.701        
cufflinks 3.204       Low
cufflinks 2.64       Low
cufflinks 10.673        
cufflinks 10.215        
cufflinks 5.31        
cufflinks 4.638        
cufflinks 8.19        
cufflinks 2.615       Low
cufflinks 23.135     High High
cufflinks 8.143        
cufflinks 2.516       Low
cufflinks 17.426     High High
cufflinks 9.637        
cufflinks 14.023     High High
cufflinks 4.587        
cufflinks 12.89        
cufflinks 17.934     High High
cufflinks 1.31075 0.00924807 2.61226   Low
cufflinks 9.74304 2.57879 16.9073    
cufflinks 5.93853 0.0 12.1964    
cufflinks 19.0386 1.53188 36.5452   High
cufflinks 3.78021 0.461101 7.09932   Low

0 Strain