Gene : RRP40 C. reinhardtii v5.6
Primary Identifier:  ? Cre07.g319900 Defline:  (1 of 1) K03681 - exosome complex component RRP40 (RRP40, EXOSC3)
Genomic Order:  176 Name:  ? Cre07.g319900
Secondary Identifier:  ? PAC:30774439
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre07.g319900 0.5kb upstream 0.5kb upstream 2181 true chromosome_7: 1092266-1094446 Chlamydomonas reinhardtii
Cre07.g319900 0.5kb upstream 0.5kb upstream 500 false chromosome_7: 1093947-1094446 Chlamydomonas reinhardtii
Cre07.g319900 0.5kb downstream 0.5kb downstream 2181 true chromosome_7: 1091766-1093946 Chlamydomonas reinhardtii
Cre07.g319900 0.5kb downstream 0.5kb downstream 500 false chromosome_7: 1091766-1092265 Chlamydomonas reinhardtii
Cre07.g319900 1.0kb upstream 1.0kb upstream 2681 true chromosome_7: 1092266-1094946 Chlamydomonas reinhardtii
Cre07.g319900 1.0kb upstream 1.0kb upstream 1000 false chromosome_7: 1093947-1094946 Chlamydomonas reinhardtii
Cre07.g319900 1.0kb downstream 1.0kb downstream 2681 true chromosome_7: 1091266-1093946 Chlamydomonas reinhardtii
Cre07.g319900 1.0kb downstream 1.0kb downstream 1000 false chromosome_7: 1091266-1092265 Chlamydomonas reinhardtii
Cre07.g319900 2.0kb upstream 2.0kb upstream 3681 true chromosome_7: 1092266-1095946 Chlamydomonas reinhardtii
Cre07.g319900 2.0kb upstream 2.0kb upstream 2000 false chromosome_7: 1093947-1095946 Chlamydomonas reinhardtii
Cre07.g319900 2.0kb downstream 2.0kb downstream 3681 true chromosome_7: 1090266-1093946 Chlamydomonas reinhardtii
Cre07.g319900 2.0kb downstream 2.0kb downstream 2000 false chromosome_7: 1090266-1092265 Chlamydomonas reinhardtii
Cre07.g319900 5.0kb upstream 5.0kb upstream 6681 true chromosome_7: 1092266-1098946 Chlamydomonas reinhardtii
Cre07.g319900 5.0kb upstream 5.0kb upstream 5000 false chromosome_7: 1093947-1098946 Chlamydomonas reinhardtii
Cre07.g319900 5.0kb downstream 5.0kb downstream 6681 true chromosome_7: 1087266-1093946 Chlamydomonas reinhardtii
Cre07.g319900 5.0kb downstream 5.0kb downstream 5000 false chromosome_7: 1087266-1092265 Chlamydomonas reinhardtii
Cre07.g319900 10.0kb upstream 10.0kb upstream 11681 true chromosome_7: 1092266-1103946 Chlamydomonas reinhardtii
Cre07.g319900 10.0kb upstream 10.0kb upstream 10000 false chromosome_7: 1093947-1103946 Chlamydomonas reinhardtii
Cre07.g319900 10.0kb downstream 10.0kb downstream 11681 true chromosome_7: 1082266-1093946 Chlamydomonas reinhardtii
Cre07.g319900 10.0kb downstream 10.0kb downstream 10000 false chromosome_7: 1082266-1092265 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108514 5260 Chlorophyte View MSA
123428759 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.646        
cufflinks 10.839       High
cufflinks 6.648        
cufflinks 6.243        
cufflinks 8.322        
cufflinks 9.295        
cufflinks 7.961        
cufflinks 9.285        
cufflinks 8.939        
cufflinks 4.82       Low
cufflinks 5.007        
cufflinks 7.951        
cufflinks 9.654        
cufflinks 9.272        
cufflinks 5.81        
cufflinks 9.466        
cufflinks 2.692       Low
cufflinks 5.968        
cufflinks 3.589       Low
cufflinks 6.965        
cufflinks 6.243        
cufflinks 5.25        
cufflinks 10.436       High
cufflinks 8.564        
cufflinks 4.234       Low
cufflinks 18.7127 2.64757 34.7779   High
cufflinks 14.8319 3.84372 25.82   High
cufflinks 3.41554 0.0 7.82639   Low
cufflinks 7.9511 1.26126 14.6409   Low
cufflinks 12.4796 2.38758 22.5717   High

0 Strain