Gene : Cre08.g358538 C. reinhardtii v5.6
Defline:  (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  28
Name:  ? Cre08.g358538 Secondary Identifier:  ? PAC:30773892
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii CAROTENOID-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5943 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5947 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre08.g358538 0.5kb upstream 0.5kb upstream 8007 true chromosome_8: 130877-138883 Chlamydomonas reinhardtii
Cre08.g358538 0.5kb upstream 0.5kb upstream 500 false chromosome_8: 130877-131376 Chlamydomonas reinhardtii
Cre08.g358538 0.5kb downstream 0.5kb downstream 8007 true chromosome_8: 131377-139383 Chlamydomonas reinhardtii
Cre08.g358538 0.5kb downstream 0.5kb downstream 500 false chromosome_8: 138884-139383 Chlamydomonas reinhardtii
Cre08.g358538 1.0kb upstream 1.0kb upstream 8507 true chromosome_8: 130377-138883 Chlamydomonas reinhardtii
Cre08.g358538 1.0kb upstream 1.0kb upstream 1000 false chromosome_8: 130377-131376 Chlamydomonas reinhardtii
Cre08.g358538 1.0kb downstream 1.0kb downstream 8507 true chromosome_8: 131377-139883 Chlamydomonas reinhardtii
Cre08.g358538 1.0kb downstream 1.0kb downstream 1000 false chromosome_8: 138884-139883 Chlamydomonas reinhardtii
Cre08.g358538 2.0kb upstream 2.0kb upstream 9507 true chromosome_8: 129377-138883 Chlamydomonas reinhardtii
Cre08.g358538 2.0kb upstream 2.0kb upstream 2000 false chromosome_8: 129377-131376 Chlamydomonas reinhardtii
Cre08.g358538 2.0kb downstream 2.0kb downstream 9507 true chromosome_8: 131377-140883 Chlamydomonas reinhardtii
Cre08.g358538 2.0kb downstream 2.0kb downstream 2000 false chromosome_8: 138884-140883 Chlamydomonas reinhardtii
Cre08.g358538 5.0kb upstream 5.0kb upstream 12507 true chromosome_8: 126377-138883 Chlamydomonas reinhardtii
Cre08.g358538 5.0kb upstream 5.0kb upstream 5000 false chromosome_8: 126377-131376 Chlamydomonas reinhardtii
Cre08.g358538 5.0kb downstream 5.0kb downstream 12507 true chromosome_8: 131377-143883 Chlamydomonas reinhardtii
Cre08.g358538 5.0kb downstream 5.0kb downstream 5000 false chromosome_8: 138884-143883 Chlamydomonas reinhardtii
Cre08.g358538 10.0kb upstream 10.0kb upstream 17507 true chromosome_8: 121377-138883 Chlamydomonas reinhardtii
Cre08.g358538 10.0kb upstream 10.0kb upstream 10000 false chromosome_8: 121377-131376 Chlamydomonas reinhardtii
Cre08.g358538 10.0kb downstream 10.0kb downstream 17507 true chromosome_8: 131377-148883 Chlamydomonas reinhardtii
Cre08.g358538 10.0kb downstream 10.0kb downstream 10000 false chromosome_8: 138884-148883 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111338 5260 Chlorophyte View MSA
123423874 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.88     High  
cufflinks 13.015        
cufflinks 7.215        
cufflinks 11.075        
cufflinks 11.758        
cufflinks 14.131     High  
cufflinks 6.382        
cufflinks 11.449        
cufflinks 11.444     High  
cufflinks 4.308       Low
cufflinks 7.444        
cufflinks 13.197        
cufflinks 5.776       Low
cufflinks 15.015     High  
cufflinks 9.597        
cufflinks 14.317     High  
cufflinks 13.713     High  
cufflinks 11.718        
cufflinks 1.488       Low
cufflinks 11.813        
cufflinks 12.012        
cufflinks 14.655     High  
cufflinks 12.065        
cufflinks 10.361        
cufflinks 17.259     High High
cufflinks 175.731 0.0 354.012 High High
cufflinks 31.4419 7.02296 55.8609 High  
cufflinks 25.1131 0.0 51.2911    
cufflinks 22.7235 0.343177 45.1038 High  
cufflinks 34.037 3.51254 64.5614 High  

0 Strain