Gene : TSA2 C. reinhardtii v5.6
Primary Identifier:  ? Cre08.g368900 Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED
Genomic Order:  312 Name:  ? Cre08.g368900
Secondary Identifier:  ? PAC:30773527
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre08.g368900 0.5kb upstream 0.5kb upstream 13756 true chromosome_8: 2109950-2123705 Chlamydomonas reinhardtii
Cre08.g368900 0.5kb upstream 0.5kb upstream 500 false chromosome_8: 2123206-2123705 Chlamydomonas reinhardtii
Cre08.g368900 0.5kb downstream 0.5kb downstream 13756 true chromosome_8: 2109450-2123205 Chlamydomonas reinhardtii
Cre08.g368900 0.5kb downstream 0.5kb downstream 500 false chromosome_8: 2109450-2109949 Chlamydomonas reinhardtii
Cre08.g368900 1.0kb upstream 1.0kb upstream 14256 true chromosome_8: 2109950-2124205 Chlamydomonas reinhardtii
Cre08.g368900 1.0kb upstream 1.0kb upstream 1000 false chromosome_8: 2123206-2124205 Chlamydomonas reinhardtii
Cre08.g368900 1.0kb downstream 1.0kb downstream 14256 true chromosome_8: 2108950-2123205 Chlamydomonas reinhardtii
Cre08.g368900 1.0kb downstream 1.0kb downstream 1000 false chromosome_8: 2108950-2109949 Chlamydomonas reinhardtii
Cre08.g368900 2.0kb upstream 2.0kb upstream 15256 true chromosome_8: 2109950-2125205 Chlamydomonas reinhardtii
Cre08.g368900 2.0kb upstream 2.0kb upstream 2000 false chromosome_8: 2123206-2125205 Chlamydomonas reinhardtii
Cre08.g368900 2.0kb downstream 2.0kb downstream 15256 true chromosome_8: 2107950-2123205 Chlamydomonas reinhardtii
Cre08.g368900 2.0kb downstream 2.0kb downstream 2000 false chromosome_8: 2107950-2109949 Chlamydomonas reinhardtii
Cre08.g368900 5.0kb upstream 5.0kb upstream 18256 true chromosome_8: 2109950-2128205 Chlamydomonas reinhardtii
Cre08.g368900 5.0kb upstream 5.0kb upstream 5000 false chromosome_8: 2123206-2128205 Chlamydomonas reinhardtii
Cre08.g368900 5.0kb downstream 5.0kb downstream 18256 true chromosome_8: 2104950-2123205 Chlamydomonas reinhardtii
Cre08.g368900 5.0kb downstream 5.0kb downstream 5000 false chromosome_8: 2104950-2109949 Chlamydomonas reinhardtii
Cre08.g368900 10.0kb upstream 10.0kb upstream 23256 true chromosome_8: 2109950-2133205 Chlamydomonas reinhardtii
Cre08.g368900 10.0kb upstream 10.0kb upstream 10000 false chromosome_8: 2123206-2133205 Chlamydomonas reinhardtii
Cre08.g368900 10.0kb downstream 10.0kb downstream 23256 true chromosome_8: 2099950-2123205 Chlamydomonas reinhardtii
Cre08.g368900 10.0kb downstream 10.0kb downstream 10000 false chromosome_8: 2099950-2109949 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108444 5260 Chlorophyte View MSA
123425032 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.982        
cufflinks 0.944        
cufflinks 0.527        
cufflinks 0.894        
cufflinks 0.885        
cufflinks 0.697        
cufflinks 0.325       Low
cufflinks 0.911        
cufflinks 1.389        
cufflinks 0.22       Low
cufflinks 0.952        
cufflinks 0.887        
cufflinks 0.382        
cufflinks 0.847        
cufflinks 0.794        
cufflinks 1.595       High
cufflinks 1.693       High
cufflinks 0.613        
cufflinks 0.118       Low
cufflinks 0.348       Low
cufflinks 0.932        
cufflinks 1.643       High
cufflinks 0.421        
cufflinks 1.158        
cufflinks 1.791       High
cufflinks 10.8427 0.0 23.4256    
cufflinks 22.0014 5.37759 38.6253    
cufflinks 7.54003 0.0 15.1618    
cufflinks 7.48557 0.0 15.2938    
cufflinks 13.3808 0.457693 26.3038    

0 Strain