Gene : Cre09.g403300 C. reinhardtii v5.6
Defline:  (1 of 1) K03144 - transcription initiation factor TFIIH subunit 4 (TFIIH4, GTF2H4, TFB2) Genomic Order:  105
Name:  ? Cre09.g403300 Secondary Identifier:  ? PAC:30780944
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre09.g403300 0.5kb upstream 0.5kb upstream 6464 true chromosome_9: 641572-648035 Chlamydomonas reinhardtii
Cre09.g403300 0.5kb upstream 0.5kb upstream 500 false chromosome_9: 641572-642071 Chlamydomonas reinhardtii
Cre09.g403300 0.5kb downstream 0.5kb downstream 6464 true chromosome_9: 642072-648535 Chlamydomonas reinhardtii
Cre09.g403300 0.5kb downstream 0.5kb downstream 500 false chromosome_9: 648036-648535 Chlamydomonas reinhardtii
Cre09.g403300 1.0kb upstream 1.0kb upstream 6964 true chromosome_9: 641072-648035 Chlamydomonas reinhardtii
Cre09.g403300 1.0kb upstream 1.0kb upstream 1000 false chromosome_9: 641072-642071 Chlamydomonas reinhardtii
Cre09.g403300 1.0kb downstream 1.0kb downstream 6964 true chromosome_9: 642072-649035 Chlamydomonas reinhardtii
Cre09.g403300 1.0kb downstream 1.0kb downstream 1000 false chromosome_9: 648036-649035 Chlamydomonas reinhardtii
Cre09.g403300 2.0kb upstream 2.0kb upstream 7964 true chromosome_9: 640072-648035 Chlamydomonas reinhardtii
Cre09.g403300 2.0kb upstream 2.0kb upstream 2000 false chromosome_9: 640072-642071 Chlamydomonas reinhardtii
Cre09.g403300 2.0kb downstream 2.0kb downstream 7964 true chromosome_9: 642072-650035 Chlamydomonas reinhardtii
Cre09.g403300 2.0kb downstream 2.0kb downstream 2000 false chromosome_9: 648036-650035 Chlamydomonas reinhardtii
Cre09.g403300 5.0kb upstream 5.0kb upstream 10964 true chromosome_9: 637072-648035 Chlamydomonas reinhardtii
Cre09.g403300 5.0kb upstream 5.0kb upstream 5000 false chromosome_9: 637072-642071 Chlamydomonas reinhardtii
Cre09.g403300 5.0kb downstream 5.0kb downstream 10964 true chromosome_9: 642072-653035 Chlamydomonas reinhardtii
Cre09.g403300 5.0kb downstream 5.0kb downstream 5000 false chromosome_9: 648036-653035 Chlamydomonas reinhardtii
Cre09.g403300 10.0kb upstream 10.0kb upstream 15964 true chromosome_9: 632072-648035 Chlamydomonas reinhardtii
Cre09.g403300 10.0kb upstream 10.0kb upstream 10000 false chromosome_9: 632072-642071 Chlamydomonas reinhardtii
Cre09.g403300 10.0kb downstream 10.0kb downstream 15964 true chromosome_9: 642072-658035 Chlamydomonas reinhardtii
Cre09.g403300 10.0kb downstream 10.0kb downstream 10000 false chromosome_9: 648036-658035 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110156 5260 Chlorophyte View MSA
123427579 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.503       Low
cufflinks 2.126        
cufflinks 1.787        
cufflinks 1.863        
cufflinks 1.681        
cufflinks 1.798        
cufflinks 1.976        
cufflinks 2.48       High
cufflinks 1.744        
cufflinks 1.395       Low
cufflinks 1.644        
cufflinks 2.056        
cufflinks 2.079        
cufflinks 1.834        
cufflinks 1.772        
cufflinks 1.95        
cufflinks 2.324        
cufflinks 1.662        
cufflinks 1.063       Low
cufflinks 2.266        
cufflinks 1.899        
cufflinks 2.519       High
cufflinks 1.925        
cufflinks 2.223        
cufflinks 2.805       High
cufflinks 4.73314 0.800322 8.66596   Low
cufflinks 3.95311 0.642865 7.26335   Low
cufflinks 4.94632 0.0 10.2218    
cufflinks 4.43902 0.744208 8.13383   Low
cufflinks 4.6905 0.763659 8.61734   High

0 Strain