Gene : Cucsa.156230 C. sativus v1.0
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  30
Name:  ? Cucsa.156230 Secondary Identifier:  ? PAC:16964858
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.156230 0.5kb upstream 0.5kb upstream 1190 true scaffold01139: 524963-526152 Cucumis sativus
Cucsa.156230 0.5kb upstream 0.5kb upstream 500 false scaffold01139: 524963-525462 Cucumis sativus
Cucsa.156230 0.5kb downstream 0.5kb downstream 1190 true scaffold01139: 525463-526652 Cucumis sativus
Cucsa.156230 0.5kb downstream 0.5kb downstream 500 false scaffold01139: 526153-526652 Cucumis sativus
Cucsa.156230 1.0kb upstream 1.0kb upstream 1690 true scaffold01139: 524463-526152 Cucumis sativus
Cucsa.156230 1.0kb upstream 1.0kb upstream 1000 false scaffold01139: 524463-525462 Cucumis sativus
Cucsa.156230 1.0kb downstream 1.0kb downstream 1690 true scaffold01139: 525463-527152 Cucumis sativus
Cucsa.156230 1.0kb downstream 1.0kb downstream 1000 false scaffold01139: 526153-527152 Cucumis sativus
Cucsa.156230 2.0kb upstream 2.0kb upstream 2690 true scaffold01139: 523463-526152 Cucumis sativus
Cucsa.156230 2.0kb upstream 2.0kb upstream 2000 false scaffold01139: 523463-525462 Cucumis sativus
Cucsa.156230 2.0kb downstream 2.0kb downstream 2690 true scaffold01139: 525463-528152 Cucumis sativus
Cucsa.156230 2.0kb downstream 2.0kb downstream 2000 false scaffold01139: 526153-528152 Cucumis sativus
Cucsa.156230 5.0kb upstream 5.0kb upstream 5690 true scaffold01139: 520463-526152 Cucumis sativus
Cucsa.156230 5.0kb upstream 5.0kb upstream 5000 false scaffold01139: 520463-525462 Cucumis sativus
Cucsa.156230 5.0kb downstream 5.0kb downstream 5690 true scaffold01139: 525463-531152 Cucumis sativus
Cucsa.156230 5.0kb downstream 5.0kb downstream 5000 false scaffold01139: 526153-531152 Cucumis sativus
Cucsa.156230 10.0kb upstream 10.0kb upstream 10690 true scaffold01139: 515463-526152 Cucumis sativus
Cucsa.156230 10.0kb upstream 10.0kb upstream 10000 false scaffold01139: 515463-525462 Cucumis sativus
Cucsa.156230 10.0kb downstream 10.0kb downstream 10690 true scaffold01139: 525463-536152 Cucumis sativus
Cucsa.156230 10.0kb downstream 10.0kb downstream 10000 false scaffold01139: 526153-536152 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310699 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain