Gene : Cucsa.160810 C. sativus v1.0
Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Genomic Order:  121
Name:  ? Cucsa.160810 Secondary Identifier:  ? PAC:16965411
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus GLYSYN-PWY Cucumis sativus pathologic  
Csativus PWY-2161 Cucumis sativus pathologic  
Csativus PWY-3841 Cucumis sativus pathologic  
Csativus SER-GLYSYN-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.160810 0.5kb upstream 0.5kb upstream 5805 true scaffold01144: 898618-904422 Cucumis sativus
Cucsa.160810 0.5kb upstream 0.5kb upstream 500 false scaffold01144: 898618-899117 Cucumis sativus
Cucsa.160810 0.5kb downstream 0.5kb downstream 5805 true scaffold01144: 899118-904922 Cucumis sativus
Cucsa.160810 0.5kb downstream 0.5kb downstream 500 false scaffold01144: 904423-904922 Cucumis sativus
Cucsa.160810 1.0kb upstream 1.0kb upstream 6305 true scaffold01144: 898118-904422 Cucumis sativus
Cucsa.160810 1.0kb upstream 1.0kb upstream 1000 false scaffold01144: 898118-899117 Cucumis sativus
Cucsa.160810 1.0kb downstream 1.0kb downstream 6305 true scaffold01144: 899118-905422 Cucumis sativus
Cucsa.160810 1.0kb downstream 1.0kb downstream 1000 false scaffold01144: 904423-905422 Cucumis sativus
Cucsa.160810 2.0kb upstream 2.0kb upstream 7305 true scaffold01144: 897118-904422 Cucumis sativus
Cucsa.160810 2.0kb upstream 2.0kb upstream 2000 false scaffold01144: 897118-899117 Cucumis sativus
Cucsa.160810 2.0kb downstream 2.0kb downstream 7305 true scaffold01144: 899118-906422 Cucumis sativus
Cucsa.160810 2.0kb downstream 2.0kb downstream 2000 false scaffold01144: 904423-906422 Cucumis sativus
Cucsa.160810 5.0kb upstream 5.0kb upstream 10305 true scaffold01144: 894118-904422 Cucumis sativus
Cucsa.160810 5.0kb upstream 5.0kb upstream 5000 false scaffold01144: 894118-899117 Cucumis sativus
Cucsa.160810 5.0kb downstream 5.0kb downstream 10305 true scaffold01144: 899118-909422 Cucumis sativus
Cucsa.160810 5.0kb downstream 5.0kb downstream 5000 false scaffold01144: 904423-909422 Cucumis sativus
Cucsa.160810 10.0kb upstream 10.0kb upstream 15305 true scaffold01144: 889118-904422 Cucumis sativus
Cucsa.160810 10.0kb upstream 10.0kb upstream 10000 false scaffold01144: 889118-899117 Cucumis sativus
Cucsa.160810 10.0kb downstream 10.0kb downstream 15305 true scaffold01144: 899118-914422 Cucumis sativus
Cucsa.160810 10.0kb downstream 10.0kb downstream 10000 false scaffold01144: 904423-914422 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain