Gene : Cucsa.179650 C. sativus v1.0
Defline:  (1 of 6) 1.13.11.51 - 9-cis-epoxycarotenoid dioxygenase / VP14 Genomic Order:  1
Name:  ? Cucsa.179650 Secondary Identifier:  ? PAC:16967196
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PWY-695 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.179650 0.5kb upstream 0.5kb upstream 2284 true scaffold01233: 23829-26112 Cucumis sativus
Cucsa.179650 0.5kb upstream 0.5kb upstream 500 false scaffold01233: 23829-24328 Cucumis sativus
Cucsa.179650 0.5kb downstream 0.5kb downstream 2284 true scaffold01233: 24329-26612 Cucumis sativus
Cucsa.179650 0.5kb downstream 0.5kb downstream 500 false scaffold01233: 26113-26612 Cucumis sativus
Cucsa.179650 1.0kb upstream 1.0kb upstream 2784 true scaffold01233: 23329-26112 Cucumis sativus
Cucsa.179650 1.0kb upstream 1.0kb upstream 1000 false scaffold01233: 23329-24328 Cucumis sativus
Cucsa.179650 1.0kb downstream 1.0kb downstream 2784 true scaffold01233: 24329-27112 Cucumis sativus
Cucsa.179650 1.0kb downstream 1.0kb downstream 1000 false scaffold01233: 26113-27112 Cucumis sativus
Cucsa.179650 2.0kb upstream 2.0kb upstream 3784 true scaffold01233: 22329-26112 Cucumis sativus
Cucsa.179650 2.0kb upstream 2.0kb upstream 2000 false scaffold01233: 22329-24328 Cucumis sativus
Cucsa.179650 2.0kb downstream 2.0kb downstream 3784 true scaffold01233: 24329-28112 Cucumis sativus
Cucsa.179650 2.0kb downstream 2.0kb downstream 2000 false scaffold01233: 26113-28112 Cucumis sativus
Cucsa.179650 5.0kb upstream 5.0kb upstream 6784 true scaffold01233: 19329-26112 Cucumis sativus
Cucsa.179650 5.0kb upstream 5.0kb upstream 5000 false scaffold01233: 19329-24328 Cucumis sativus
Cucsa.179650 5.0kb downstream 5.0kb downstream 6784 true scaffold01233: 24329-31112 Cucumis sativus
Cucsa.179650 5.0kb downstream 5.0kb downstream 5000 false scaffold01233: 26113-31112 Cucumis sativus
Cucsa.179650 10.0kb upstream 10.0kb upstream 11784 true scaffold01233: 14329-26112 Cucumis sativus
Cucsa.179650 10.0kb upstream 10.0kb upstream 10000 false scaffold01233: 14329-24328 Cucumis sativus
Cucsa.179650 10.0kb downstream 10.0kb downstream 11784 true scaffold01233: 24329-36112 Cucumis sativus
Cucsa.179650 10.0kb downstream 10.0kb downstream 10000 false scaffold01233: 26113-36112 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310479 5265 Fabidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain