Gene : Cucsa.179980 C. sativus v1.0
Defline:  (1 of 6) 2.1.2.1 - Glycine hydroxymethyltransferase / Threonine aldolase Genomic Order:  34
Name:  ? Cucsa.179980 Secondary Identifier:  ? PAC:16967258
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus GLYSYN-PWY Cucumis sativus pathologic  
Csativus PWY-2161 Cucumis sativus pathologic  
Csativus PWY-3841 Cucumis sativus pathologic  
Csativus SER-GLYSYN-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.179980 0.5kb upstream 0.5kb upstream 4614 true scaffold01233: 344655-349268 Cucumis sativus
Cucsa.179980 0.5kb upstream 0.5kb upstream 500 false scaffold01233: 348769-349268 Cucumis sativus
Cucsa.179980 0.5kb downstream 0.5kb downstream 4614 true scaffold01233: 344155-348768 Cucumis sativus
Cucsa.179980 0.5kb downstream 0.5kb downstream 500 false scaffold01233: 344155-344654 Cucumis sativus
Cucsa.179980 1.0kb upstream 1.0kb upstream 5114 true scaffold01233: 344655-349768 Cucumis sativus
Cucsa.179980 1.0kb upstream 1.0kb upstream 1000 false scaffold01233: 348769-349768 Cucumis sativus
Cucsa.179980 1.0kb downstream 1.0kb downstream 5114 true scaffold01233: 343655-348768 Cucumis sativus
Cucsa.179980 1.0kb downstream 1.0kb downstream 1000 false scaffold01233: 343655-344654 Cucumis sativus
Cucsa.179980 2.0kb upstream 2.0kb upstream 6114 true scaffold01233: 344655-350768 Cucumis sativus
Cucsa.179980 2.0kb upstream 2.0kb upstream 2000 false scaffold01233: 348769-350768 Cucumis sativus
Cucsa.179980 2.0kb downstream 2.0kb downstream 6114 true scaffold01233: 342655-348768 Cucumis sativus
Cucsa.179980 2.0kb downstream 2.0kb downstream 2000 false scaffold01233: 342655-344654 Cucumis sativus
Cucsa.179980 5.0kb upstream 5.0kb upstream 9114 true scaffold01233: 344655-353768 Cucumis sativus
Cucsa.179980 5.0kb upstream 5.0kb upstream 5000 false scaffold01233: 348769-353768 Cucumis sativus
Cucsa.179980 5.0kb downstream 5.0kb downstream 9114 true scaffold01233: 339655-348768 Cucumis sativus
Cucsa.179980 5.0kb downstream 5.0kb downstream 5000 false scaffold01233: 339655-344654 Cucumis sativus
Cucsa.179980 10.0kb upstream 10.0kb upstream 14114 true scaffold01233: 344655-358768 Cucumis sativus
Cucsa.179980 10.0kb upstream 10.0kb upstream 10000 false scaffold01233: 348769-358768 Cucumis sativus
Cucsa.179980 10.0kb downstream 10.0kb downstream 14114 true scaffold01233: 334655-348768 Cucumis sativus
Cucsa.179980 10.0kb downstream 10.0kb downstream 10000 false scaffold01233: 334655-344654 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791751 5273 Angiosperm View MSA
122305343 5265 Fabidae View MSA
124062282 5270 Rosid View MSA
123744611 5271 Pentapetalae View MSA
122789540 5272 Eudicot View MSA
121345595 5274 Embryophyte View MSA
123425169 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain