Gene : Cucsa.188660 C. sativus v1.0
Defline:  (1 of 85) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  6
Name:  ? Cucsa.188660 Secondary Identifier:  ? PAC:16967833
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.188660 0.5kb upstream 0.5kb upstream 2314 true scaffold01298: 50810-53123 Cucumis sativus
Cucsa.188660 0.5kb upstream 0.5kb upstream 500 false scaffold01298: 52624-53123 Cucumis sativus
Cucsa.188660 0.5kb downstream 0.5kb downstream 2314 true scaffold01298: 50310-52623 Cucumis sativus
Cucsa.188660 0.5kb downstream 0.5kb downstream 500 false scaffold01298: 50310-50809 Cucumis sativus
Cucsa.188660 1.0kb upstream 1.0kb upstream 2814 true scaffold01298: 50810-53623 Cucumis sativus
Cucsa.188660 1.0kb upstream 1.0kb upstream 1000 false scaffold01298: 52624-53623 Cucumis sativus
Cucsa.188660 1.0kb downstream 1.0kb downstream 2814 true scaffold01298: 49810-52623 Cucumis sativus
Cucsa.188660 1.0kb downstream 1.0kb downstream 1000 false scaffold01298: 49810-50809 Cucumis sativus
Cucsa.188660 2.0kb upstream 2.0kb upstream 3814 true scaffold01298: 50810-54623 Cucumis sativus
Cucsa.188660 2.0kb upstream 2.0kb upstream 2000 false scaffold01298: 52624-54623 Cucumis sativus
Cucsa.188660 2.0kb downstream 2.0kb downstream 3814 true scaffold01298: 48810-52623 Cucumis sativus
Cucsa.188660 2.0kb downstream 2.0kb downstream 2000 false scaffold01298: 48810-50809 Cucumis sativus
Cucsa.188660 5.0kb upstream 5.0kb upstream 6814 true scaffold01298: 50810-57623 Cucumis sativus
Cucsa.188660 5.0kb upstream 5.0kb upstream 5000 false scaffold01298: 52624-57623 Cucumis sativus
Cucsa.188660 5.0kb downstream 5.0kb downstream 6814 true scaffold01298: 45810-52623 Cucumis sativus
Cucsa.188660 5.0kb downstream 5.0kb downstream 5000 false scaffold01298: 45810-50809 Cucumis sativus
Cucsa.188660 10.0kb upstream 10.0kb upstream 11814 true scaffold01298: 50810-62623 Cucumis sativus
Cucsa.188660 10.0kb upstream 10.0kb upstream 10000 false scaffold01298: 52624-62623 Cucumis sativus
Cucsa.188660 10.0kb downstream 10.0kb downstream 11814 true scaffold01298: 40810-52623 Cucumis sativus
Cucsa.188660 10.0kb downstream 10.0kb downstream 10000 false scaffold01298: 40810-50809 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121603879 5273 Angiosperm Singleton cluster - no MSA
122234129 5265 Fabidae Singleton cluster - no MSA
123980354 5270 Rosid Singleton cluster - no MSA
123556031 5271 Pentapetalae Singleton cluster - no MSA
122590845 5272 Eudicot Singleton cluster - no MSA
120876169 5274 Embryophyte Singleton cluster - no MSA
122917060 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain