Gene : Cucsa.226970 C. sativus v1.0
Defline:  (1 of 1) PF00623//PF04983//PF04997 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) Genomic Order:  11
Name:  ? Cucsa.226970 Secondary Identifier:  ? PAC:16970005
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.226970 0.5kb upstream 0.5kb upstream 4722 true scaffold01910: 86856-91577 Cucumis sativus
Cucsa.226970 0.5kb upstream 0.5kb upstream 500 false scaffold01910: 86856-87355 Cucumis sativus
Cucsa.226970 0.5kb downstream 0.5kb downstream 4722 true scaffold01910: 87356-92077 Cucumis sativus
Cucsa.226970 0.5kb downstream 0.5kb downstream 500 false scaffold01910: 91578-92077 Cucumis sativus
Cucsa.226970 1.0kb upstream 1.0kb upstream 5222 true scaffold01910: 86356-91577 Cucumis sativus
Cucsa.226970 1.0kb upstream 1.0kb upstream 1000 false scaffold01910: 86356-87355 Cucumis sativus
Cucsa.226970 1.0kb downstream 1.0kb downstream 5222 true scaffold01910: 87356-92577 Cucumis sativus
Cucsa.226970 1.0kb downstream 1.0kb downstream 1000 false scaffold01910: 91578-92577 Cucumis sativus
Cucsa.226970 2.0kb upstream 2.0kb upstream 6222 true scaffold01910: 85356-91577 Cucumis sativus
Cucsa.226970 2.0kb upstream 2.0kb upstream 2000 false scaffold01910: 85356-87355 Cucumis sativus
Cucsa.226970 2.0kb downstream 2.0kb downstream 6222 true scaffold01910: 87356-93577 Cucumis sativus
Cucsa.226970 2.0kb downstream 2.0kb downstream 2000 false scaffold01910: 91578-93577 Cucumis sativus
Cucsa.226970 5.0kb upstream 5.0kb upstream 9222 true scaffold01910: 82356-91577 Cucumis sativus
Cucsa.226970 5.0kb upstream 5.0kb upstream 5000 false scaffold01910: 82356-87355 Cucumis sativus
Cucsa.226970 5.0kb downstream 5.0kb downstream 9222 true scaffold01910: 87356-96577 Cucumis sativus
Cucsa.226970 5.0kb downstream 5.0kb downstream 5000 false scaffold01910: 91578-96577 Cucumis sativus
Cucsa.226970 10.0kb upstream 10.0kb upstream 14222 true scaffold01910: 77356-91577 Cucumis sativus
Cucsa.226970 10.0kb upstream 10.0kb upstream 10000 false scaffold01910: 77356-87355 Cucumis sativus
Cucsa.226970 10.0kb downstream 10.0kb downstream 14222 true scaffold01910: 87356-101577 Cucumis sativus
Cucsa.226970 10.0kb downstream 10.0kb downstream 10000 false scaffold01910: 91578-101577 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121604247 5273 Angiosperm Singleton cluster - no MSA
122234500 5265 Fabidae Singleton cluster - no MSA
123980723 5270 Rosid Singleton cluster - no MSA
123556400 5271 Pentapetalae Singleton cluster - no MSA
122591214 5272 Eudicot Singleton cluster - no MSA
120876537 5274 Embryophyte Singleton cluster - no MSA
122917426 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain