Gene : Cucsa.226980 C. sativus v1.0
Defline:  (1 of 1) PF04998//PF05000 - RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) Genomic Order:  12
Name:  ? Cucsa.226980 Secondary Identifier:  ? PAC:16970006
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.226980 0.5kb upstream 0.5kb upstream 7335 true scaffold01910: 95093-102427 Cucumis sativus
Cucsa.226980 0.5kb upstream 0.5kb upstream 500 false scaffold01910: 95093-95592 Cucumis sativus
Cucsa.226980 0.5kb downstream 0.5kb downstream 7335 true scaffold01910: 95593-102927 Cucumis sativus
Cucsa.226980 0.5kb downstream 0.5kb downstream 500 false scaffold01910: 102428-102927 Cucumis sativus
Cucsa.226980 1.0kb upstream 1.0kb upstream 7835 true scaffold01910: 94593-102427 Cucumis sativus
Cucsa.226980 1.0kb upstream 1.0kb upstream 1000 false scaffold01910: 94593-95592 Cucumis sativus
Cucsa.226980 1.0kb downstream 1.0kb downstream 7835 true scaffold01910: 95593-103427 Cucumis sativus
Cucsa.226980 1.0kb downstream 1.0kb downstream 1000 false scaffold01910: 102428-103427 Cucumis sativus
Cucsa.226980 2.0kb upstream 2.0kb upstream 8835 true scaffold01910: 93593-102427 Cucumis sativus
Cucsa.226980 2.0kb upstream 2.0kb upstream 2000 false scaffold01910: 93593-95592 Cucumis sativus
Cucsa.226980 2.0kb downstream 2.0kb downstream 8835 true scaffold01910: 95593-104427 Cucumis sativus
Cucsa.226980 2.0kb downstream 2.0kb downstream 2000 false scaffold01910: 102428-104427 Cucumis sativus
Cucsa.226980 5.0kb upstream 5.0kb upstream 11835 true scaffold01910: 90593-102427 Cucumis sativus
Cucsa.226980 5.0kb upstream 5.0kb upstream 5000 false scaffold01910: 90593-95592 Cucumis sativus
Cucsa.226980 5.0kb downstream 5.0kb downstream 11835 true scaffold01910: 95593-107427 Cucumis sativus
Cucsa.226980 5.0kb downstream 5.0kb downstream 5000 false scaffold01910: 102428-107427 Cucumis sativus
Cucsa.226980 10.0kb upstream 10.0kb upstream 16835 true scaffold01910: 85593-102427 Cucumis sativus
Cucsa.226980 10.0kb upstream 10.0kb upstream 10000 false scaffold01910: 85593-95592 Cucumis sativus
Cucsa.226980 10.0kb downstream 10.0kb downstream 16835 true scaffold01910: 95593-112427 Cucumis sativus
Cucsa.226980 10.0kb downstream 10.0kb downstream 10000 false scaffold01910: 102428-112427 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121604248 5273 Angiosperm Singleton cluster - no MSA
122234501 5265 Fabidae Singleton cluster - no MSA
123980724 5270 Rosid Singleton cluster - no MSA
123556401 5271 Pentapetalae Singleton cluster - no MSA
122591215 5272 Eudicot Singleton cluster - no MSA
120876538 5274 Embryophyte Singleton cluster - no MSA
122917427 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain