Gene : Cucsa.242200 C. sativus v1.0
Defline:  (1 of 2) 5.2.1.13 - Prolycopene isomerase / CRTISO Genomic Order:  200
Name:  ? Cucsa.242200 Secondary Identifier:  ? PAC:16971129
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus CAROTENOID-PWY Cucumis sativus pathologic  
Csativus PWY-6475 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.242200 0.5kb upstream 0.5kb upstream 7126 true scaffold02047: 1964762-1971887 Cucumis sativus
Cucsa.242200 0.5kb upstream 0.5kb upstream 500 false scaffold02047: 1964762-1965261 Cucumis sativus
Cucsa.242200 0.5kb downstream 0.5kb downstream 7126 true scaffold02047: 1965262-1972387 Cucumis sativus
Cucsa.242200 0.5kb downstream 0.5kb downstream 500 false scaffold02047: 1971888-1972387 Cucumis sativus
Cucsa.242200 1.0kb upstream 1.0kb upstream 7626 true scaffold02047: 1964262-1971887 Cucumis sativus
Cucsa.242200 1.0kb upstream 1.0kb upstream 1000 false scaffold02047: 1964262-1965261 Cucumis sativus
Cucsa.242200 1.0kb downstream 1.0kb downstream 7626 true scaffold02047: 1965262-1972887 Cucumis sativus
Cucsa.242200 1.0kb downstream 1.0kb downstream 1000 false scaffold02047: 1971888-1972887 Cucumis sativus
Cucsa.242200 2.0kb upstream 2.0kb upstream 8626 true scaffold02047: 1963262-1971887 Cucumis sativus
Cucsa.242200 2.0kb upstream 2.0kb upstream 2000 false scaffold02047: 1963262-1965261 Cucumis sativus
Cucsa.242200 2.0kb downstream 2.0kb downstream 8626 true scaffold02047: 1965262-1973887 Cucumis sativus
Cucsa.242200 2.0kb downstream 2.0kb downstream 2000 false scaffold02047: 1971888-1973887 Cucumis sativus
Cucsa.242200 5.0kb upstream 5.0kb upstream 11626 true scaffold02047: 1960262-1971887 Cucumis sativus
Cucsa.242200 5.0kb upstream 5.0kb upstream 5000 false scaffold02047: 1960262-1965261 Cucumis sativus
Cucsa.242200 5.0kb downstream 5.0kb downstream 11626 true scaffold02047: 1965262-1976887 Cucumis sativus
Cucsa.242200 5.0kb downstream 5.0kb downstream 5000 false scaffold02047: 1971888-1976887 Cucumis sativus
Cucsa.242200 10.0kb upstream 10.0kb upstream 16626 true scaffold02047: 1955262-1971887 Cucumis sativus
Cucsa.242200 10.0kb upstream 10.0kb upstream 10000 false scaffold02047: 1955262-1965261 Cucumis sativus
Cucsa.242200 10.0kb downstream 10.0kb downstream 16626 true scaffold02047: 1965262-1981887 Cucumis sativus
Cucsa.242200 10.0kb downstream 10.0kb downstream 10000 false scaffold02047: 1971888-1981887 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
122309577 5265 Fabidae View MSA
124064637 5270 Rosid View MSA
123738016 5271 Pentapetalae View MSA
122791420 5272 Eudicot View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain