Gene : Cucsa.247830 C. sativus v1.0
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  11
Name:  ? Cucsa.247830 Secondary Identifier:  ? PAC:16971453
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.247830 0.5kb upstream 0.5kb upstream 2603 true scaffold02205: 163779-166381 Cucumis sativus
Cucsa.247830 0.5kb upstream 0.5kb upstream 500 false scaffold02205: 165882-166381 Cucumis sativus
Cucsa.247830 0.5kb downstream 0.5kb downstream 2603 true scaffold02205: 163279-165881 Cucumis sativus
Cucsa.247830 0.5kb downstream 0.5kb downstream 500 false scaffold02205: 163279-163778 Cucumis sativus
Cucsa.247830 1.0kb upstream 1.0kb upstream 3103 true scaffold02205: 163779-166881 Cucumis sativus
Cucsa.247830 1.0kb upstream 1.0kb upstream 1000 false scaffold02205: 165882-166881 Cucumis sativus
Cucsa.247830 1.0kb downstream 1.0kb downstream 3103 true scaffold02205: 162779-165881 Cucumis sativus
Cucsa.247830 1.0kb downstream 1.0kb downstream 1000 false scaffold02205: 162779-163778 Cucumis sativus
Cucsa.247830 2.0kb upstream 2.0kb upstream 4103 true scaffold02205: 163779-167881 Cucumis sativus
Cucsa.247830 2.0kb upstream 2.0kb upstream 2000 false scaffold02205: 165882-167881 Cucumis sativus
Cucsa.247830 2.0kb downstream 2.0kb downstream 4103 true scaffold02205: 161779-165881 Cucumis sativus
Cucsa.247830 2.0kb downstream 2.0kb downstream 2000 false scaffold02205: 161779-163778 Cucumis sativus
Cucsa.247830 5.0kb upstream 5.0kb upstream 7103 true scaffold02205: 163779-170881 Cucumis sativus
Cucsa.247830 5.0kb upstream 5.0kb upstream 5000 false scaffold02205: 165882-170881 Cucumis sativus
Cucsa.247830 5.0kb downstream 5.0kb downstream 7103 true scaffold02205: 158779-165881 Cucumis sativus
Cucsa.247830 5.0kb downstream 5.0kb downstream 5000 false scaffold02205: 158779-163778 Cucumis sativus
Cucsa.247830 10.0kb upstream 10.0kb upstream 12103 true scaffold02205: 163779-175881 Cucumis sativus
Cucsa.247830 10.0kb upstream 10.0kb upstream 10000 false scaffold02205: 165882-175881 Cucumis sativus
Cucsa.247830 10.0kb downstream 10.0kb downstream 12103 true scaffold02205: 153779-165881 Cucumis sativus
Cucsa.247830 10.0kb downstream 10.0kb downstream 10000 false scaffold02205: 153779-163778 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain