Gene : Cucsa.248340 C. sativus v1.0
Defline:  (1 of 2) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  7
Name:  ? Cucsa.248340 Secondary Identifier:  ? PAC:16971467
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PWY-735 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.248340 0.5kb upstream 0.5kb upstream 1742 true scaffold02207: 116965-118706 Cucumis sativus
Cucsa.248340 0.5kb upstream 0.5kb upstream 500 false scaffold02207: 116965-117464 Cucumis sativus
Cucsa.248340 0.5kb downstream 0.5kb downstream 1742 true scaffold02207: 117465-119206 Cucumis sativus
Cucsa.248340 0.5kb downstream 0.5kb downstream 500 false scaffold02207: 118707-119206 Cucumis sativus
Cucsa.248340 1.0kb upstream 1.0kb upstream 2242 true scaffold02207: 116465-118706 Cucumis sativus
Cucsa.248340 1.0kb upstream 1.0kb upstream 1000 false scaffold02207: 116465-117464 Cucumis sativus
Cucsa.248340 1.0kb downstream 1.0kb downstream 2242 true scaffold02207: 117465-119706 Cucumis sativus
Cucsa.248340 1.0kb downstream 1.0kb downstream 1000 false scaffold02207: 118707-119706 Cucumis sativus
Cucsa.248340 2.0kb upstream 2.0kb upstream 3242 true scaffold02207: 115465-118706 Cucumis sativus
Cucsa.248340 2.0kb upstream 2.0kb upstream 2000 false scaffold02207: 115465-117464 Cucumis sativus
Cucsa.248340 2.0kb downstream 2.0kb downstream 3242 true scaffold02207: 117465-120706 Cucumis sativus
Cucsa.248340 2.0kb downstream 2.0kb downstream 2000 false scaffold02207: 118707-120706 Cucumis sativus
Cucsa.248340 5.0kb upstream 5.0kb upstream 6242 true scaffold02207: 112465-118706 Cucumis sativus
Cucsa.248340 5.0kb upstream 5.0kb upstream 5000 false scaffold02207: 112465-117464 Cucumis sativus
Cucsa.248340 5.0kb downstream 5.0kb downstream 6242 true scaffold02207: 117465-123706 Cucumis sativus
Cucsa.248340 5.0kb downstream 5.0kb downstream 5000 false scaffold02207: 118707-123706 Cucumis sativus
Cucsa.248340 10.0kb upstream 10.0kb upstream 11242 true scaffold02207: 107465-118706 Cucumis sativus
Cucsa.248340 10.0kb upstream 10.0kb upstream 10000 false scaffold02207: 107465-117464 Cucumis sativus
Cucsa.248340 10.0kb downstream 10.0kb downstream 11242 true scaffold02207: 117465-128706 Cucumis sativus
Cucsa.248340 10.0kb downstream 10.0kb downstream 10000 false scaffold02207: 118707-128706 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305764 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain