Gene : Cucsa.311610 C. sativus v1.0
Defline:  (1 of 2) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  152
Name:  ? Cucsa.311610 Secondary Identifier:  ? PAC:16976724
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus TRNA-CHARGING-PWY Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.311610 0.5kb upstream 0.5kb upstream 3941 true scaffold02995: 1153091-1157031 Cucumis sativus
Cucsa.311610 0.5kb upstream 0.5kb upstream 500 false scaffold02995: 1153091-1153590 Cucumis sativus
Cucsa.311610 0.5kb downstream 0.5kb downstream 3941 true scaffold02995: 1153591-1157531 Cucumis sativus
Cucsa.311610 0.5kb downstream 0.5kb downstream 500 false scaffold02995: 1157032-1157531 Cucumis sativus
Cucsa.311610 1.0kb upstream 1.0kb upstream 4441 true scaffold02995: 1152591-1157031 Cucumis sativus
Cucsa.311610 1.0kb upstream 1.0kb upstream 1000 false scaffold02995: 1152591-1153590 Cucumis sativus
Cucsa.311610 1.0kb downstream 1.0kb downstream 4441 true scaffold02995: 1153591-1158031 Cucumis sativus
Cucsa.311610 1.0kb downstream 1.0kb downstream 1000 false scaffold02995: 1157032-1158031 Cucumis sativus
Cucsa.311610 2.0kb upstream 2.0kb upstream 5441 true scaffold02995: 1151591-1157031 Cucumis sativus
Cucsa.311610 2.0kb upstream 2.0kb upstream 2000 false scaffold02995: 1151591-1153590 Cucumis sativus
Cucsa.311610 2.0kb downstream 2.0kb downstream 5441 true scaffold02995: 1153591-1159031 Cucumis sativus
Cucsa.311610 2.0kb downstream 2.0kb downstream 2000 false scaffold02995: 1157032-1159031 Cucumis sativus
Cucsa.311610 5.0kb upstream 5.0kb upstream 8441 true scaffold02995: 1148591-1157031 Cucumis sativus
Cucsa.311610 5.0kb upstream 5.0kb upstream 5000 false scaffold02995: 1148591-1153590 Cucumis sativus
Cucsa.311610 5.0kb downstream 5.0kb downstream 8441 true scaffold02995: 1153591-1162031 Cucumis sativus
Cucsa.311610 5.0kb downstream 5.0kb downstream 5000 false scaffold02995: 1157032-1162031 Cucumis sativus
Cucsa.311610 10.0kb upstream 10.0kb upstream 13441 true scaffold02995: 1143591-1157031 Cucumis sativus
Cucsa.311610 10.0kb upstream 10.0kb upstream 10000 false scaffold02995: 1143591-1153590 Cucumis sativus
Cucsa.311610 10.0kb downstream 10.0kb downstream 13441 true scaffold02995: 1153591-1167031 Cucumis sativus
Cucsa.311610 10.0kb downstream 10.0kb downstream 10000 false scaffold02995: 1157032-1167031 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301777 5265 Fabidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain