Protein Domain : IPR028363

Type:  Family Name:  DNA-directed RNA polymerase, subunit RPB6
Description:  Subunit RPB6/RPABC2 is a common component of eukaryotic RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, respectively. In RNA polymerase II (Pol II), RPB6/RPABC2 is part of the clamp element and together with parts of RPB1 and RPB2 forms a pocket to which the RPB4-RPB7 subcomplex binds [].In addition to RNA polymerases I, II, and III, the essential RNA polymerases present in all eukaryotes, plants have two additional nuclear RNA polymerases, abbreviated as Pol IV and Pol V, that play nonredundant roles in siRNA-directed DNA methylation and gene silencing. Pol IV and Pol V are composed of subunits that are paralogous or identical to the 12 subunits of Pol II, including subunit RPB6 []. Short Name:  RPB6
Paste the following link

0 Child Features

0 Contains

1 Cross References

Identifier
PIRSF500154

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003899 IPR028363
GO:0006351 IPR028363
GO:0005634 IPR028363
GO:0005665 IPR028363

4 Ontology Annotations

GO Term Gene Name
GO:0003899 IPR028363
GO:0006351 IPR028363
GO:0005634 IPR028363
GO:0005665 IPR028363

1 Parent Features

DB identifier Type Name
IPR006111 Family Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit

104 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
CKAN_01175400 A0A443NWV9 PAC:42708170 Cinnamomum kanehirae 146  
PtStettler14.15G119300.1.p PAC:42762021 Populus trichocarpa Stettler14 143  
PtStettler14.12G112700.1.p A0A2K1YD70 PAC:42756427 Populus trichocarpa Stettler14 143  
Potri.012G136900.1.p A0A2K1YD70 PAC:42783226 Populus trichocarpa 143  
Potri.015G138800.1.p B9ID35 PAC:42776292 Populus trichocarpa 143  
PvUI111.07G068600.1.p PAC:42836892 Phaseolus vulgaris UI111 142  
PvUI111.07G009900.1.p V7BA71 PAC:42837481 Phaseolus vulgaris UI111 141  
BdiBd21-3.3G0609800.1.p PAC:42990010 Brachypodium distachyon Bd21-3 142  
BdiBd21-3.1G0206000.1.p PAC:42958360 Brachypodium distachyon Bd21-3 142  
CepurR40.9G029500.1.p PAC:43000438 Ceratodon purpureus R40 145  
CepurR40.N002400.1.p PAC:43013917 Ceratodon purpureus R40 145  
CepurGG1.9G031500.2.p PAC:43062278 Ceratodon purpureus GG1 145  
CepurGG1.9G031500.1.p PAC:43062277 Ceratodon purpureus GG1 145  
Vigun07g287100.1.p A0A4D6N121 PAC:43121913 Vigna unguiculata 142  
Vigun07g229300.1.p A0A4D6N380 PAC:43123541 Vigna unguiculata 141  
VuSuvita2.07G279900.1.p A0A4D6N121 PAC:43138109 Vigna unguiculata Suvita2 142  
VuSuvita2.07G222900.1.p A0A4D6N380 PAC:43135980 Vigna unguiculata Suvita2 141  
VuUCR779.07G221500.1.p A0A4D6N380 PAC:43237049 Vigna unguiculata UCR779 141  
VuUCR779.07G278300.1.p A0A4D6N121 PAC:43236218 Vigna unguiculata UCR779 142  
VuSanzi.07G219400.1.p A0A4D6N380 PAC:43282895 Vigna unguiculata Sanzi 141  
VuSanzi.07G275800.1.p A0A4D6N121 PAC:43281852 Vigna unguiculata Sanzi 142  
VuCB5-2.07G279800.1.p A0A4D6N121 PAC:43313203 Vigna unguiculata CB5-2 142  
VuCB5-2.07G222400.1.p A0A4D6N380 PAC:43315360 Vigna unguiculata CB5-2 141  
EL10Ac1g00990.1 PAC:43397442 Beta vulgaris 142  
BdiBd1-1.1G189400.1.p I1GQJ3 PAC:43461116 Brachypodium distachyon Bd1-1 142  
BdiBd1-1.3G546800.1.p I1IAK6 PAC:43432032 Brachypodium distachyon Bd1-1 142  
Dioal.16G036100.1.p PAC:43470901 Dioscorea alata 144  
MgTOL.K0379.1.p A0A022R7U5 PAC:43525971 Mimulus guttatus TOL 143  
SbiRTX430.01G183200.1.p A0A1B6QJJ4 PAC:43579448 Sorghum bicolor RTx430 142  
SbiRTX430.02G131000.1.p C5X5S2 PAC:43555686 Sorghum bicolor RTx430 143  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9852112
            19110459