Gene : Medtr1g022485 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR15160:SF3 - BIFUNCTIONAL NUCLEASE 1-RELATED Description:  nuclease in basal defense response protein
Genomic Order:  951 Name:  ? Medtr1g022485
Secondary Identifier:  ? PAC:31099014
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g022485 0.5kb upstream 0.5kb upstream 3839 true chr1: 7215469-7219307 Medicago truncatula
Medtr1g022485 0.5kb upstream 0.5kb upstream 500 false chr1: 7218808-7219307 Medicago truncatula
Medtr1g022485 0.5kb downstream 0.5kb downstream 3839 true chr1: 7214969-7218807 Medicago truncatula
Medtr1g022485 0.5kb downstream 0.5kb downstream 500 false chr1: 7214969-7215468 Medicago truncatula
Medtr1g022485 1.0kb upstream 1.0kb upstream 4339 true chr1: 7215469-7219807 Medicago truncatula
Medtr1g022485 1.0kb upstream 1.0kb upstream 1000 false chr1: 7218808-7219807 Medicago truncatula
Medtr1g022485 1.0kb downstream 1.0kb downstream 4339 true chr1: 7214469-7218807 Medicago truncatula
Medtr1g022485 1.0kb downstream 1.0kb downstream 1000 false chr1: 7214469-7215468 Medicago truncatula
Medtr1g022485 2.0kb upstream 2.0kb upstream 5339 true chr1: 7215469-7220807 Medicago truncatula
Medtr1g022485 2.0kb upstream 2.0kb upstream 2000 false chr1: 7218808-7220807 Medicago truncatula
Medtr1g022485 2.0kb downstream 2.0kb downstream 5339 true chr1: 7213469-7218807 Medicago truncatula
Medtr1g022485 2.0kb downstream 2.0kb downstream 2000 false chr1: 7213469-7215468 Medicago truncatula
Medtr1g022485 5.0kb upstream 5.0kb upstream 8339 true chr1: 7215469-7223807 Medicago truncatula
Medtr1g022485 5.0kb upstream 5.0kb upstream 5000 false chr1: 7218808-7223807 Medicago truncatula
Medtr1g022485 5.0kb downstream 5.0kb downstream 8339 true chr1: 7210469-7218807 Medicago truncatula
Medtr1g022485 5.0kb downstream 5.0kb downstream 5000 false chr1: 7210469-7215468 Medicago truncatula
Medtr1g022485 10.0kb upstream 10.0kb upstream 13339 true chr1: 7215469-7228807 Medicago truncatula
Medtr1g022485 10.0kb upstream 10.0kb upstream 10000 false chr1: 7218808-7228807 Medicago truncatula
Medtr1g022485 10.0kb downstream 10.0kb downstream 13339 true chr1: 7205469-7218807 Medicago truncatula
Medtr1g022485 10.0kb downstream 10.0kb downstream 10000 false chr1: 7205469-7215468 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311227 5265 Fabidae View MSA
124063334 5270 Rosid View MSA
123751879 5271 Pentapetalae View MSA
122794039 5272 Eudicot View MSA
122042536 5273 Angiosperm View MSA
121348555 5274 Embryophyte View MSA
123425976 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.145     High High
cufflinks 30.719     High  
cufflinks 26.704     High  
cufflinks 7.406       Low
cufflinks 21.689     High  
cufflinks 5.963       Low
cufflinks 19.036     High  
cufflinks 26.991     High  
cufflinks 10.997     High  

0 Strain