Gene : Medtr1g025550 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR10774:SF50 - SYNAPTOTAGMIN-1-RELATED Description:  calcium-dependent lipid-binding (CaLB domain) family protein
Genomic Order:  1088 Name:  ? Medtr1g025550
Secondary Identifier:  ? PAC:31092495
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g025550 0.5kb upstream 0.5kb upstream 4925 true chr1: 8173689-8178613 Medicago truncatula
Medtr1g025550 0.5kb upstream 0.5kb upstream 500 false chr1: 8178114-8178613 Medicago truncatula
Medtr1g025550 0.5kb downstream 0.5kb downstream 4925 true chr1: 8173189-8178113 Medicago truncatula
Medtr1g025550 0.5kb downstream 0.5kb downstream 500 false chr1: 8173189-8173688 Medicago truncatula
Medtr1g025550 1.0kb upstream 1.0kb upstream 5425 true chr1: 8173689-8179113 Medicago truncatula
Medtr1g025550 1.0kb upstream 1.0kb upstream 1000 false chr1: 8178114-8179113 Medicago truncatula
Medtr1g025550 1.0kb downstream 1.0kb downstream 5425 true chr1: 8172689-8178113 Medicago truncatula
Medtr1g025550 1.0kb downstream 1.0kb downstream 1000 false chr1: 8172689-8173688 Medicago truncatula
Medtr1g025550 2.0kb upstream 2.0kb upstream 6425 true chr1: 8173689-8180113 Medicago truncatula
Medtr1g025550 2.0kb upstream 2.0kb upstream 2000 false chr1: 8178114-8180113 Medicago truncatula
Medtr1g025550 2.0kb downstream 2.0kb downstream 6425 true chr1: 8171689-8178113 Medicago truncatula
Medtr1g025550 2.0kb downstream 2.0kb downstream 2000 false chr1: 8171689-8173688 Medicago truncatula
Medtr1g025550 5.0kb upstream 5.0kb upstream 9425 true chr1: 8173689-8183113 Medicago truncatula
Medtr1g025550 5.0kb upstream 5.0kb upstream 5000 false chr1: 8178114-8183113 Medicago truncatula
Medtr1g025550 5.0kb downstream 5.0kb downstream 9425 true chr1: 8168689-8178113 Medicago truncatula
Medtr1g025550 5.0kb downstream 5.0kb downstream 5000 false chr1: 8168689-8173688 Medicago truncatula
Medtr1g025550 10.0kb upstream 10.0kb upstream 14425 true chr1: 8173689-8188113 Medicago truncatula
Medtr1g025550 10.0kb upstream 10.0kb upstream 10000 false chr1: 8178114-8188113 Medicago truncatula
Medtr1g025550 10.0kb downstream 10.0kb downstream 14425 true chr1: 8163689-8178113 Medicago truncatula
Medtr1g025550 10.0kb downstream 10.0kb downstream 10000 false chr1: 8163689-8173688 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307753 5265 Fabidae View MSA
124069636 5270 Rosid View MSA
123744925 5271 Pentapetalae View MSA
122791810 5272 Eudicot View MSA
122043926 5273 Angiosperm View MSA
123429031 5275 Viridiplantae View MSA
121346982 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.341        
cufflinks 43.473     High High
cufflinks 28.736     High  
cufflinks 5.703        
cufflinks 47.935     High High
cufflinks 1.796       Low
cufflinks 7.491        
cufflinks 31.056     High  
cufflinks 4.347        

0 Strain