Gene : Medtr1g027580 M. truncatula Mt4.0v1
Defline:  (1 of 3) PF00069//PF07645//PF13947 - Protein kinase domain (Pkinase) // Calcium-binding EGF domain (EGF_CA) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Description:  wall-associated receptor kinase-like protein
Genomic Order:  1223 Name:  ? Medtr1g027580
Secondary Identifier:  ? PAC:31098254
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g027580 0.5kb upstream 0.5kb upstream 4004 true chr1: 9161150-9165153 Medicago truncatula
Medtr1g027580 0.5kb upstream 0.5kb upstream 500 false chr1: 9164654-9165153 Medicago truncatula
Medtr1g027580 0.5kb downstream 0.5kb downstream 4004 true chr1: 9160650-9164653 Medicago truncatula
Medtr1g027580 0.5kb downstream 0.5kb downstream 500 false chr1: 9160650-9161149 Medicago truncatula
Medtr1g027580 1.0kb upstream 1.0kb upstream 4504 true chr1: 9161150-9165653 Medicago truncatula
Medtr1g027580 1.0kb upstream 1.0kb upstream 1000 false chr1: 9164654-9165653 Medicago truncatula
Medtr1g027580 1.0kb downstream 1.0kb downstream 4504 true chr1: 9160150-9164653 Medicago truncatula
Medtr1g027580 1.0kb downstream 1.0kb downstream 1000 false chr1: 9160150-9161149 Medicago truncatula
Medtr1g027580 2.0kb upstream 2.0kb upstream 5504 true chr1: 9161150-9166653 Medicago truncatula
Medtr1g027580 2.0kb upstream 2.0kb upstream 2000 false chr1: 9164654-9166653 Medicago truncatula
Medtr1g027580 2.0kb downstream 2.0kb downstream 5504 true chr1: 9159150-9164653 Medicago truncatula
Medtr1g027580 2.0kb downstream 2.0kb downstream 2000 false chr1: 9159150-9161149 Medicago truncatula
Medtr1g027580 5.0kb upstream 5.0kb upstream 8504 true chr1: 9161150-9169653 Medicago truncatula
Medtr1g027580 5.0kb upstream 5.0kb upstream 5000 false chr1: 9164654-9169653 Medicago truncatula
Medtr1g027580 5.0kb downstream 5.0kb downstream 8504 true chr1: 9156150-9164653 Medicago truncatula
Medtr1g027580 5.0kb downstream 5.0kb downstream 5000 false chr1: 9156150-9161149 Medicago truncatula
Medtr1g027580 10.0kb upstream 10.0kb upstream 13504 true chr1: 9161150-9174653 Medicago truncatula
Medtr1g027580 10.0kb upstream 10.0kb upstream 10000 false chr1: 9164654-9174653 Medicago truncatula
Medtr1g027580 10.0kb downstream 10.0kb downstream 13504 true chr1: 9151150-9164653 Medicago truncatula
Medtr1g027580 10.0kb downstream 10.0kb downstream 10000 false chr1: 9151150-9161149 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315140 5265 Fabidae View MSA
124072250 5270 Rosid View MSA
123752135 5271 Pentapetalae View MSA
122797292 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.906       High
cufflinks 0.007     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.004     Low Low
cufflinks 1.479       High
cufflinks 0.413        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.13        

0 Strain