Gene : Medtr1g052405 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12419//PTHR12419:SF25 - OTU DOMAIN CONTAINING PROTEIN Description:  OTU-like cysteine protease
Genomic Order:  2699 Name:  ? Medtr1g052405
Secondary Identifier:  ? PAC:31093181
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g052405 0.5kb upstream 0.5kb upstream 5173 true chr1: 21268497-21273669 Medicago truncatula
Medtr1g052405 0.5kb upstream 0.5kb upstream 500 false chr1: 21268497-21268996 Medicago truncatula
Medtr1g052405 0.5kb downstream 0.5kb downstream 5173 true chr1: 21268997-21274169 Medicago truncatula
Medtr1g052405 0.5kb downstream 0.5kb downstream 500 false chr1: 21273670-21274169 Medicago truncatula
Medtr1g052405 1.0kb upstream 1.0kb upstream 5673 true chr1: 21267997-21273669 Medicago truncatula
Medtr1g052405 1.0kb upstream 1.0kb upstream 1000 false chr1: 21267997-21268996 Medicago truncatula
Medtr1g052405 1.0kb downstream 1.0kb downstream 5673 true chr1: 21268997-21274669 Medicago truncatula
Medtr1g052405 1.0kb downstream 1.0kb downstream 1000 false chr1: 21273670-21274669 Medicago truncatula
Medtr1g052405 2.0kb upstream 2.0kb upstream 6673 true chr1: 21266997-21273669 Medicago truncatula
Medtr1g052405 2.0kb upstream 2.0kb upstream 2000 false chr1: 21266997-21268996 Medicago truncatula
Medtr1g052405 2.0kb downstream 2.0kb downstream 6673 true chr1: 21268997-21275669 Medicago truncatula
Medtr1g052405 2.0kb downstream 2.0kb downstream 2000 false chr1: 21273670-21275669 Medicago truncatula
Medtr1g052405 5.0kb upstream 5.0kb upstream 9673 true chr1: 21263997-21273669 Medicago truncatula
Medtr1g052405 5.0kb upstream 5.0kb upstream 5000 false chr1: 21263997-21268996 Medicago truncatula
Medtr1g052405 5.0kb downstream 5.0kb downstream 9673 true chr1: 21268997-21278669 Medicago truncatula
Medtr1g052405 5.0kb downstream 5.0kb downstream 5000 false chr1: 21273670-21278669 Medicago truncatula
Medtr1g052405 10.0kb upstream 10.0kb upstream 14673 true chr1: 21258997-21273669 Medicago truncatula
Medtr1g052405 10.0kb upstream 10.0kb upstream 10000 false chr1: 21258997-21268996 Medicago truncatula
Medtr1g052405 10.0kb downstream 10.0kb downstream 14673 true chr1: 21268997-21283669 Medicago truncatula
Medtr1g052405 10.0kb downstream 10.0kb downstream 10000 false chr1: 21273670-21283669 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074941 5270 Rosid View MSA
122307233 5265 Fabidae View MSA
123749661 5271 Pentapetalae View MSA
122794711 5272 Eudicot View MSA
122048756 5273 Angiosperm View MSA
121349238 5274 Embryophyte View MSA
123428485 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.013        
cufflinks 1.107        
cufflinks 1.78       High
cufflinks 0.702        
cufflinks 1.638       High
cufflinks 0.489       Low
cufflinks 0.971        
cufflinks 1.398        
cufflinks 0.672        

0 Strain