Gene : Medtr1g017020 M. truncatula Mt4.0v1
Defline:  (1 of 8) PF00331//PF02018 - Glycosyl hydrolase family 10 (Glyco_hydro_10) // Carbohydrate binding domain (CBM_4_9) Description:  endo-1,4-beta-xylanase A-like protein
Genomic Order:  604 Name:  ? Medtr1g017020
Secondary Identifier:  ? PAC:31097783
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g017020 0.5kb upstream 0.5kb upstream 5957 true chr1: 4618414-4624370 Medicago truncatula
Medtr1g017020 0.5kb upstream 0.5kb upstream 500 false chr1: 4618414-4618913 Medicago truncatula
Medtr1g017020 0.5kb downstream 0.5kb downstream 5957 true chr1: 4618914-4624870 Medicago truncatula
Medtr1g017020 0.5kb downstream 0.5kb downstream 500 false chr1: 4624371-4624870 Medicago truncatula
Medtr1g017020 1.0kb upstream 1.0kb upstream 6457 true chr1: 4617914-4624370 Medicago truncatula
Medtr1g017020 1.0kb upstream 1.0kb upstream 1000 false chr1: 4617914-4618913 Medicago truncatula
Medtr1g017020 1.0kb downstream 1.0kb downstream 6457 true chr1: 4618914-4625370 Medicago truncatula
Medtr1g017020 1.0kb downstream 1.0kb downstream 1000 false chr1: 4624371-4625370 Medicago truncatula
Medtr1g017020 2.0kb upstream 2.0kb upstream 7457 true chr1: 4616914-4624370 Medicago truncatula
Medtr1g017020 2.0kb upstream 2.0kb upstream 2000 false chr1: 4616914-4618913 Medicago truncatula
Medtr1g017020 2.0kb downstream 2.0kb downstream 7457 true chr1: 4618914-4626370 Medicago truncatula
Medtr1g017020 2.0kb downstream 2.0kb downstream 2000 false chr1: 4624371-4626370 Medicago truncatula
Medtr1g017020 5.0kb upstream 5.0kb upstream 10457 true chr1: 4613914-4624370 Medicago truncatula
Medtr1g017020 5.0kb upstream 5.0kb upstream 5000 false chr1: 4613914-4618913 Medicago truncatula
Medtr1g017020 5.0kb downstream 5.0kb downstream 10457 true chr1: 4618914-4629370 Medicago truncatula
Medtr1g017020 5.0kb downstream 5.0kb downstream 5000 false chr1: 4624371-4629370 Medicago truncatula
Medtr1g017020 10.0kb upstream 10.0kb upstream 15457 true chr1: 4608914-4624370 Medicago truncatula
Medtr1g017020 10.0kb upstream 10.0kb upstream 10000 false chr1: 4608914-4618913 Medicago truncatula
Medtr1g017020 10.0kb downstream 10.0kb downstream 15457 true chr1: 4618914-4634370 Medicago truncatula
Medtr1g017020 10.0kb downstream 10.0kb downstream 10000 false chr1: 4624371-4634370 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303499 5265 Fabidae View MSA
124066828 5270 Rosid View MSA
123742236 5271 Pentapetalae View MSA
122786340 5272 Eudicot View MSA
122047511 5273 Angiosperm View MSA
121347321 5274 Embryophyte View MSA
123426707 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.3        
cufflinks 0.376        
cufflinks 0.209       Low
cufflinks 1.376        
cufflinks 0.56        
cufflinks 0.682        
cufflinks 1.744        
cufflinks 0.278        
cufflinks 4.205       High

0 Strain