Gene : Medtr1g018840 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12411//PTHR12411:SF352 - CYSTEINE PROTEASE FAMILY C1-RELATED Description:  papain family cysteine protease
Genomic Order:  709 Name:  ? Medtr1g018840
Secondary Identifier:  ? PAC:31096862
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g018840 0.5kb upstream 0.5kb upstream 5361 true chr1: 5545981-5551341 Medicago truncatula
Medtr1g018840 0.5kb upstream 0.5kb upstream 500 false chr1: 5550842-5551341 Medicago truncatula
Medtr1g018840 0.5kb downstream 0.5kb downstream 5361 true chr1: 5545481-5550841 Medicago truncatula
Medtr1g018840 0.5kb downstream 0.5kb downstream 500 false chr1: 5545481-5545980 Medicago truncatula
Medtr1g018840 1.0kb upstream 1.0kb upstream 5861 true chr1: 5545981-5551841 Medicago truncatula
Medtr1g018840 1.0kb upstream 1.0kb upstream 1000 false chr1: 5550842-5551841 Medicago truncatula
Medtr1g018840 1.0kb downstream 1.0kb downstream 5861 true chr1: 5544981-5550841 Medicago truncatula
Medtr1g018840 1.0kb downstream 1.0kb downstream 1000 false chr1: 5544981-5545980 Medicago truncatula
Medtr1g018840 2.0kb upstream 2.0kb upstream 6861 true chr1: 5545981-5552841 Medicago truncatula
Medtr1g018840 2.0kb upstream 2.0kb upstream 2000 false chr1: 5550842-5552841 Medicago truncatula
Medtr1g018840 2.0kb downstream 2.0kb downstream 6861 true chr1: 5543981-5550841 Medicago truncatula
Medtr1g018840 2.0kb downstream 2.0kb downstream 2000 false chr1: 5543981-5545980 Medicago truncatula
Medtr1g018840 5.0kb upstream 5.0kb upstream 9861 true chr1: 5545981-5555841 Medicago truncatula
Medtr1g018840 5.0kb upstream 5.0kb upstream 5000 false chr1: 5550842-5555841 Medicago truncatula
Medtr1g018840 5.0kb downstream 5.0kb downstream 9861 true chr1: 5540981-5550841 Medicago truncatula
Medtr1g018840 5.0kb downstream 5.0kb downstream 5000 false chr1: 5540981-5545980 Medicago truncatula
Medtr1g018840 10.0kb upstream 10.0kb upstream 14861 true chr1: 5545981-5560841 Medicago truncatula
Medtr1g018840 10.0kb upstream 10.0kb upstream 10000 false chr1: 5550842-5560841 Medicago truncatula
Medtr1g018840 10.0kb downstream 10.0kb downstream 14861 true chr1: 5535981-5550841 Medicago truncatula
Medtr1g018840 10.0kb downstream 10.0kb downstream 10000 false chr1: 5535981-5545980 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309015 5265 Fabidae View MSA
124071516 5270 Rosid View MSA
123751389 5271 Pentapetalae View MSA
122796567 5272 Eudicot View MSA
122043914 5273 Angiosperm View MSA
123428950 5275 Viridiplantae View MSA
121348634 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 116.734     High  
cufflinks 84.707     High  
cufflinks 94.711     High  
cufflinks 60.292     High  
cufflinks 153.37     High High
cufflinks 31.636     High Low
cufflinks 76.26     High  
cufflinks 81.468     High  
cufflinks 102.03     High  

0 Strain