Gene : Medtr1g018550 M. truncatula Mt4.0v1
Defline:  (1 of 5) PF09177 - Syntaxin 6, N-terminal (Syntaxin-6_N) Description:  syntaxin 6, amine-terminal protein
Genomic Order:  683 Name:  ? Medtr1g018550
Secondary Identifier:  ? PAC:31097916
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g018550 0.5kb upstream 0.5kb upstream 3431 true chr1: 5384512-5387942 Medicago truncatula
Medtr1g018550 0.5kb upstream 0.5kb upstream 500 false chr1: 5384512-5385011 Medicago truncatula
Medtr1g018550 0.5kb downstream 0.5kb downstream 3431 true chr1: 5385012-5388442 Medicago truncatula
Medtr1g018550 0.5kb downstream 0.5kb downstream 500 false chr1: 5387943-5388442 Medicago truncatula
Medtr1g018550 1.0kb upstream 1.0kb upstream 3931 true chr1: 5384012-5387942 Medicago truncatula
Medtr1g018550 1.0kb upstream 1.0kb upstream 1000 false chr1: 5384012-5385011 Medicago truncatula
Medtr1g018550 1.0kb downstream 1.0kb downstream 3931 true chr1: 5385012-5388942 Medicago truncatula
Medtr1g018550 1.0kb downstream 1.0kb downstream 1000 false chr1: 5387943-5388942 Medicago truncatula
Medtr1g018550 2.0kb upstream 2.0kb upstream 4931 true chr1: 5383012-5387942 Medicago truncatula
Medtr1g018550 2.0kb upstream 2.0kb upstream 2000 false chr1: 5383012-5385011 Medicago truncatula
Medtr1g018550 2.0kb downstream 2.0kb downstream 4931 true chr1: 5385012-5389942 Medicago truncatula
Medtr1g018550 2.0kb downstream 2.0kb downstream 2000 false chr1: 5387943-5389942 Medicago truncatula
Medtr1g018550 5.0kb upstream 5.0kb upstream 7931 true chr1: 5380012-5387942 Medicago truncatula
Medtr1g018550 5.0kb upstream 5.0kb upstream 5000 false chr1: 5380012-5385011 Medicago truncatula
Medtr1g018550 5.0kb downstream 5.0kb downstream 7931 true chr1: 5385012-5392942 Medicago truncatula
Medtr1g018550 5.0kb downstream 5.0kb downstream 5000 false chr1: 5387943-5392942 Medicago truncatula
Medtr1g018550 10.0kb upstream 10.0kb upstream 12931 true chr1: 5375012-5387942 Medicago truncatula
Medtr1g018550 10.0kb upstream 10.0kb upstream 10000 false chr1: 5375012-5385011 Medicago truncatula
Medtr1g018550 10.0kb downstream 10.0kb downstream 12931 true chr1: 5385012-5397942 Medicago truncatula
Medtr1g018550 10.0kb downstream 10.0kb downstream 10000 false chr1: 5387943-5397942 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309285 5265 Fabidae View MSA
124064346 5270 Rosid View MSA
123743910 5271 Pentapetalae View MSA
122788324 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.928     High High
cufflinks 10.652     High  
cufflinks 15.162     High  
cufflinks 5.119       Low
cufflinks 10.784     High  
cufflinks 7.258       Low
cufflinks 20.246     High High
cufflinks 13.525     High  
cufflinks 11.031     High  

0 Strain