Gene : Medtr1g020080 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR24012:SF403 - POLYADENYLATE-BINDING PROTEIN RBP47A Description:  polyadenylate-binding protein RBP47C
Genomic Order:  806 Name:  ? Medtr1g020080
Secondary Identifier:  ? PAC:31094033
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g020080 0.5kb upstream 0.5kb upstream 5238 true chr1: 6171090-6176327 Medicago truncatula
Medtr1g020080 0.5kb upstream 0.5kb upstream 500 false chr1: 6171090-6171589 Medicago truncatula
Medtr1g020080 0.5kb downstream 0.5kb downstream 5238 true chr1: 6171590-6176827 Medicago truncatula
Medtr1g020080 0.5kb downstream 0.5kb downstream 500 false chr1: 6176328-6176827 Medicago truncatula
Medtr1g020080 1.0kb upstream 1.0kb upstream 5738 true chr1: 6170590-6176327 Medicago truncatula
Medtr1g020080 1.0kb upstream 1.0kb upstream 1000 false chr1: 6170590-6171589 Medicago truncatula
Medtr1g020080 1.0kb downstream 1.0kb downstream 5738 true chr1: 6171590-6177327 Medicago truncatula
Medtr1g020080 1.0kb downstream 1.0kb downstream 1000 false chr1: 6176328-6177327 Medicago truncatula
Medtr1g020080 2.0kb upstream 2.0kb upstream 6738 true chr1: 6169590-6176327 Medicago truncatula
Medtr1g020080 2.0kb upstream 2.0kb upstream 2000 false chr1: 6169590-6171589 Medicago truncatula
Medtr1g020080 2.0kb downstream 2.0kb downstream 6738 true chr1: 6171590-6178327 Medicago truncatula
Medtr1g020080 2.0kb downstream 2.0kb downstream 2000 false chr1: 6176328-6178327 Medicago truncatula
Medtr1g020080 5.0kb upstream 5.0kb upstream 9738 true chr1: 6166590-6176327 Medicago truncatula
Medtr1g020080 5.0kb upstream 5.0kb upstream 5000 false chr1: 6166590-6171589 Medicago truncatula
Medtr1g020080 5.0kb downstream 5.0kb downstream 9738 true chr1: 6171590-6181327 Medicago truncatula
Medtr1g020080 5.0kb downstream 5.0kb downstream 5000 false chr1: 6176328-6181327 Medicago truncatula
Medtr1g020080 10.0kb upstream 10.0kb upstream 14738 true chr1: 6161590-6176327 Medicago truncatula
Medtr1g020080 10.0kb upstream 10.0kb upstream 10000 false chr1: 6161590-6171589 Medicago truncatula
Medtr1g020080 10.0kb downstream 10.0kb downstream 14738 true chr1: 6171590-6186327 Medicago truncatula
Medtr1g020080 10.0kb downstream 10.0kb downstream 10000 false chr1: 6176328-6186327 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296827 5265 Fabidae View MSA
124064535 5270 Rosid View MSA
123751271 5271 Pentapetalae View MSA
122796677 5272 Eudicot View MSA
122051452 5273 Angiosperm View MSA
121351371 5274 Embryophyte View MSA
123424048 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.051        
cufflinks 5.211        
cufflinks 5.93        
cufflinks 1.951       Low
cufflinks 6.497        
cufflinks 1.488       Low
cufflinks 3.762        
cufflinks 5.067        
cufflinks 4.377        

0 Strain