Gene : Medtr1g022010 M. truncatula Mt4.0v1
Defline:  (1 of 9) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Description:  histidine-tRNA ligase
Genomic Order:  886 Name:  ? Medtr1g022010
Secondary Identifier:  ? PAC:31093433
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g022010 0.5kb upstream 0.5kb upstream 5135 true chr1: 6754714-6759848 Medicago truncatula
Medtr1g022010 0.5kb upstream 0.5kb upstream 500 false chr1: 6754714-6755213 Medicago truncatula
Medtr1g022010 0.5kb downstream 0.5kb downstream 5135 true chr1: 6755214-6760348 Medicago truncatula
Medtr1g022010 0.5kb downstream 0.5kb downstream 500 false chr1: 6759849-6760348 Medicago truncatula
Medtr1g022010 1.0kb upstream 1.0kb upstream 5635 true chr1: 6754214-6759848 Medicago truncatula
Medtr1g022010 1.0kb upstream 1.0kb upstream 1000 false chr1: 6754214-6755213 Medicago truncatula
Medtr1g022010 1.0kb downstream 1.0kb downstream 5635 true chr1: 6755214-6760848 Medicago truncatula
Medtr1g022010 1.0kb downstream 1.0kb downstream 1000 false chr1: 6759849-6760848 Medicago truncatula
Medtr1g022010 2.0kb upstream 2.0kb upstream 6635 true chr1: 6753214-6759848 Medicago truncatula
Medtr1g022010 2.0kb upstream 2.0kb upstream 2000 false chr1: 6753214-6755213 Medicago truncatula
Medtr1g022010 2.0kb downstream 2.0kb downstream 6635 true chr1: 6755214-6761848 Medicago truncatula
Medtr1g022010 2.0kb downstream 2.0kb downstream 2000 false chr1: 6759849-6761848 Medicago truncatula
Medtr1g022010 5.0kb upstream 5.0kb upstream 9635 true chr1: 6750214-6759848 Medicago truncatula
Medtr1g022010 5.0kb upstream 5.0kb upstream 5000 false chr1: 6750214-6755213 Medicago truncatula
Medtr1g022010 5.0kb downstream 5.0kb downstream 9635 true chr1: 6755214-6764848 Medicago truncatula
Medtr1g022010 5.0kb downstream 5.0kb downstream 5000 false chr1: 6759849-6764848 Medicago truncatula
Medtr1g022010 10.0kb upstream 10.0kb upstream 14635 true chr1: 6745214-6759848 Medicago truncatula
Medtr1g022010 10.0kb upstream 10.0kb upstream 10000 false chr1: 6745214-6755213 Medicago truncatula
Medtr1g022010 10.0kb downstream 10.0kb downstream 14635 true chr1: 6755214-6769848 Medicago truncatula
Medtr1g022010 10.0kb downstream 10.0kb downstream 10000 false chr1: 6759849-6769848 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779866 5273 Angiosperm View MSA
122288607 5265 Fabidae View MSA
124073900 5270 Rosid View MSA
123744374 5271 Pentapetalae View MSA
122771051 5272 Eudicot View MSA
121051502 5274 Embryophyte View MSA
123091588 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain