Gene : Medtr1g052315 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Description:  endo polygalacturonase
Genomic Order:  2693 Name:  ? Medtr1g052315
Secondary Identifier:  ? PAC:31095833
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g052315 0.5kb upstream 0.5kb upstream 3991 true chr1: 21183250-21187240 Medicago truncatula
Medtr1g052315 0.5kb upstream 0.5kb upstream 500 false chr1: 21186741-21187240 Medicago truncatula
Medtr1g052315 0.5kb downstream 0.5kb downstream 3991 true chr1: 21182750-21186740 Medicago truncatula
Medtr1g052315 0.5kb downstream 0.5kb downstream 500 false chr1: 21182750-21183249 Medicago truncatula
Medtr1g052315 1.0kb upstream 1.0kb upstream 4491 true chr1: 21183250-21187740 Medicago truncatula
Medtr1g052315 1.0kb upstream 1.0kb upstream 1000 false chr1: 21186741-21187740 Medicago truncatula
Medtr1g052315 1.0kb downstream 1.0kb downstream 4491 true chr1: 21182250-21186740 Medicago truncatula
Medtr1g052315 1.0kb downstream 1.0kb downstream 1000 false chr1: 21182250-21183249 Medicago truncatula
Medtr1g052315 2.0kb upstream 2.0kb upstream 5491 true chr1: 21183250-21188740 Medicago truncatula
Medtr1g052315 2.0kb upstream 2.0kb upstream 2000 false chr1: 21186741-21188740 Medicago truncatula
Medtr1g052315 2.0kb downstream 2.0kb downstream 5491 true chr1: 21181250-21186740 Medicago truncatula
Medtr1g052315 2.0kb downstream 2.0kb downstream 2000 false chr1: 21181250-21183249 Medicago truncatula
Medtr1g052315 5.0kb upstream 5.0kb upstream 8491 true chr1: 21183250-21191740 Medicago truncatula
Medtr1g052315 5.0kb upstream 5.0kb upstream 5000 false chr1: 21186741-21191740 Medicago truncatula
Medtr1g052315 5.0kb downstream 5.0kb downstream 8491 true chr1: 21178250-21186740 Medicago truncatula
Medtr1g052315 5.0kb downstream 5.0kb downstream 5000 false chr1: 21178250-21183249 Medicago truncatula
Medtr1g052315 10.0kb upstream 10.0kb upstream 13491 true chr1: 21183250-21196740 Medicago truncatula
Medtr1g052315 10.0kb upstream 10.0kb upstream 10000 false chr1: 21186741-21196740 Medicago truncatula
Medtr1g052315 10.0kb downstream 10.0kb downstream 13491 true chr1: 21173250-21186740 Medicago truncatula
Medtr1g052315 10.0kb downstream 10.0kb downstream 10000 false chr1: 21173250-21183249 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314291 5265 Fabidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain