Gene : Medtr1g011980 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0865//KOG0879//KOG0880 - Cyclophilin type peptidyl-prolyl cis-trans isomerase // U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase // Peptidyl-prolyl cis-trans isomerase Description:  peptidyl-prolyl cis-trans isomerase
Genomic Order:  295 Name:  ? Medtr1g011980
Secondary Identifier:  ? PAC:31096107
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g011980 0.5kb upstream 0.5kb upstream 8411 true chr1: 2293801-2302211 Medicago truncatula
Medtr1g011980 0.5kb upstream 0.5kb upstream 500 false chr1: 2293801-2294300 Medicago truncatula
Medtr1g011980 0.5kb downstream 0.5kb downstream 8411 true chr1: 2294301-2302711 Medicago truncatula
Medtr1g011980 0.5kb downstream 0.5kb downstream 500 false chr1: 2302212-2302711 Medicago truncatula
Medtr1g011980 1.0kb upstream 1.0kb upstream 8911 true chr1: 2293301-2302211 Medicago truncatula
Medtr1g011980 1.0kb upstream 1.0kb upstream 1000 false chr1: 2293301-2294300 Medicago truncatula
Medtr1g011980 1.0kb downstream 1.0kb downstream 8911 true chr1: 2294301-2303211 Medicago truncatula
Medtr1g011980 1.0kb downstream 1.0kb downstream 1000 false chr1: 2302212-2303211 Medicago truncatula
Medtr1g011980 2.0kb upstream 2.0kb upstream 9911 true chr1: 2292301-2302211 Medicago truncatula
Medtr1g011980 2.0kb upstream 2.0kb upstream 2000 false chr1: 2292301-2294300 Medicago truncatula
Medtr1g011980 2.0kb downstream 2.0kb downstream 9911 true chr1: 2294301-2304211 Medicago truncatula
Medtr1g011980 2.0kb downstream 2.0kb downstream 2000 false chr1: 2302212-2304211 Medicago truncatula
Medtr1g011980 5.0kb upstream 5.0kb upstream 12911 true chr1: 2289301-2302211 Medicago truncatula
Medtr1g011980 5.0kb upstream 5.0kb upstream 5000 false chr1: 2289301-2294300 Medicago truncatula
Medtr1g011980 5.0kb downstream 5.0kb downstream 12911 true chr1: 2294301-2307211 Medicago truncatula
Medtr1g011980 5.0kb downstream 5.0kb downstream 5000 false chr1: 2302212-2307211 Medicago truncatula
Medtr1g011980 10.0kb upstream 10.0kb upstream 17911 true chr1: 2284301-2302211 Medicago truncatula
Medtr1g011980 10.0kb upstream 10.0kb upstream 10000 false chr1: 2284301-2294300 Medicago truncatula
Medtr1g011980 10.0kb downstream 10.0kb downstream 17911 true chr1: 2294301-2312211 Medicago truncatula
Medtr1g011980 10.0kb downstream 10.0kb downstream 10000 false chr1: 2302212-2312211 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040927 5273 Angiosperm View MSA
122315223 5265 Fabidae View MSA
124061433 5270 Rosid View MSA
123740248 5271 Pentapetalae View MSA
122791283 5272 Eudicot View MSA
123428973 5275 Viridiplantae View MSA
121347265 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.132        
cufflinks 2.376        
cufflinks 1.71        
cufflinks 0.401       Low
cufflinks 2.298        
cufflinks 0.359       Low
cufflinks 0.928        
cufflinks 1.765        
cufflinks 0.915        

0 Strain