Gene : Medtr1g012380 M. truncatula Mt4.0v1
Defline:  (1 of 19) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  317 Name:  ? Medtr1g012380
Secondary Identifier:  ? PAC:31096631
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g012380 0.5kb upstream 0.5kb upstream 3451 true chr1: 2444046-2447496 Medicago truncatula
Medtr1g012380 0.5kb upstream 0.5kb upstream 500 false chr1: 2444046-2444545 Medicago truncatula
Medtr1g012380 0.5kb downstream 0.5kb downstream 3451 true chr1: 2444546-2447996 Medicago truncatula
Medtr1g012380 0.5kb downstream 0.5kb downstream 500 false chr1: 2447497-2447996 Medicago truncatula
Medtr1g012380 1.0kb upstream 1.0kb upstream 3951 true chr1: 2443546-2447496 Medicago truncatula
Medtr1g012380 1.0kb upstream 1.0kb upstream 1000 false chr1: 2443546-2444545 Medicago truncatula
Medtr1g012380 1.0kb downstream 1.0kb downstream 3951 true chr1: 2444546-2448496 Medicago truncatula
Medtr1g012380 1.0kb downstream 1.0kb downstream 1000 false chr1: 2447497-2448496 Medicago truncatula
Medtr1g012380 2.0kb upstream 2.0kb upstream 4951 true chr1: 2442546-2447496 Medicago truncatula
Medtr1g012380 2.0kb upstream 2.0kb upstream 2000 false chr1: 2442546-2444545 Medicago truncatula
Medtr1g012380 2.0kb downstream 2.0kb downstream 4951 true chr1: 2444546-2449496 Medicago truncatula
Medtr1g012380 2.0kb downstream 2.0kb downstream 2000 false chr1: 2447497-2449496 Medicago truncatula
Medtr1g012380 5.0kb upstream 5.0kb upstream 7951 true chr1: 2439546-2447496 Medicago truncatula
Medtr1g012380 5.0kb upstream 5.0kb upstream 5000 false chr1: 2439546-2444545 Medicago truncatula
Medtr1g012380 5.0kb downstream 5.0kb downstream 7951 true chr1: 2444546-2452496 Medicago truncatula
Medtr1g012380 5.0kb downstream 5.0kb downstream 5000 false chr1: 2447497-2452496 Medicago truncatula
Medtr1g012380 10.0kb upstream 10.0kb upstream 12951 true chr1: 2434546-2447496 Medicago truncatula
Medtr1g012380 10.0kb upstream 10.0kb upstream 10000 false chr1: 2434546-2444545 Medicago truncatula
Medtr1g012380 10.0kb downstream 10.0kb downstream 12951 true chr1: 2444546-2457496 Medicago truncatula
Medtr1g012380 10.0kb downstream 10.0kb downstream 10000 false chr1: 2447497-2457496 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301504 5265 Fabidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.531        
cufflinks 0.25        
cufflinks 0.432        
cufflinks 0.262        
cufflinks 0.88       High
cufflinks 0.103     Low Low
cufflinks 0.702        
cufflinks 0.397        
cufflinks 0.408        

0 Strain