Gene : Medtr1g013050 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Description:  aspartate aminotransferase
Genomic Order:  363 Name:  ? Medtr1g013050
Secondary Identifier:  ? PAC:31094049
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6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ASPARTATE-DEG1-PWY Medicago truncatula pathologic  
Mtruncatula ASPARTATESYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-3001 Medicago truncatula pathologic  
Mtruncatula PWY-7115 Medicago truncatula pathologic  
Mtruncatula PWY-7117 Medicago truncatula pathologic  
Mtruncatula THRESYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g013050 0.5kb upstream 0.5kb upstream 4702 true chr1: 2810795-2815496 Medicago truncatula
Medtr1g013050 0.5kb upstream 0.5kb upstream 500 false chr1: 2814997-2815496 Medicago truncatula
Medtr1g013050 0.5kb downstream 0.5kb downstream 4702 true chr1: 2810295-2814996 Medicago truncatula
Medtr1g013050 0.5kb downstream 0.5kb downstream 500 false chr1: 2810295-2810794 Medicago truncatula
Medtr1g013050 1.0kb upstream 1.0kb upstream 5202 true chr1: 2810795-2815996 Medicago truncatula
Medtr1g013050 1.0kb upstream 1.0kb upstream 1000 false chr1: 2814997-2815996 Medicago truncatula
Medtr1g013050 1.0kb downstream 1.0kb downstream 5202 true chr1: 2809795-2814996 Medicago truncatula
Medtr1g013050 1.0kb downstream 1.0kb downstream 1000 false chr1: 2809795-2810794 Medicago truncatula
Medtr1g013050 2.0kb upstream 2.0kb upstream 6202 true chr1: 2810795-2816996 Medicago truncatula
Medtr1g013050 2.0kb upstream 2.0kb upstream 2000 false chr1: 2814997-2816996 Medicago truncatula
Medtr1g013050 2.0kb downstream 2.0kb downstream 6202 true chr1: 2808795-2814996 Medicago truncatula
Medtr1g013050 2.0kb downstream 2.0kb downstream 2000 false chr1: 2808795-2810794 Medicago truncatula
Medtr1g013050 5.0kb upstream 5.0kb upstream 9202 true chr1: 2810795-2819996 Medicago truncatula
Medtr1g013050 5.0kb upstream 5.0kb upstream 5000 false chr1: 2814997-2819996 Medicago truncatula
Medtr1g013050 5.0kb downstream 5.0kb downstream 9202 true chr1: 2805795-2814996 Medicago truncatula
Medtr1g013050 5.0kb downstream 5.0kb downstream 5000 false chr1: 2805795-2810794 Medicago truncatula
Medtr1g013050 10.0kb upstream 10.0kb upstream 14202 true chr1: 2810795-2824996 Medicago truncatula
Medtr1g013050 10.0kb upstream 10.0kb upstream 10000 false chr1: 2814997-2824996 Medicago truncatula
Medtr1g013050 10.0kb downstream 10.0kb downstream 14202 true chr1: 2800795-2814996 Medicago truncatula
Medtr1g013050 10.0kb downstream 10.0kb downstream 10000 false chr1: 2800795-2810794 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303069 5265 Fabidae View MSA
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 96.569     High High
cufflinks 23.53     High  
cufflinks 28.913     High  
cufflinks 10.665     High  
cufflinks 22.635     High  
cufflinks 5.919       Low
cufflinks 25.027     High  
cufflinks 22.272     High  
cufflinks 29.844     High  

0 Strain