Gene : Medtr1g012850 M. truncatula Mt4.0v1

Defline:  (1 of 1) PF00036//PF13833 - EF hand (EF-hand_1) // EF-hand domain pair (EF-hand_8) Description:  calcium-binding EF hand protein
Genomic Order:  348 Name:  ? Medtr1g012850
Secondary Identifier:  ? PAC:31096869

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g012850 0.5kb upstream 0.5kb upstream 5903 true chr1: 2678294-2684196 Medicago truncatula
Medtr1g012850 0.5kb upstream 0.5kb upstream 500 false chr1: 2683697-2684196 Medicago truncatula
Medtr1g012850 0.5kb downstream 0.5kb downstream 5903 true chr1: 2677794-2683696 Medicago truncatula
Medtr1g012850 0.5kb downstream 0.5kb downstream 500 false chr1: 2677794-2678293 Medicago truncatula
Medtr1g012850 1.0kb upstream 1.0kb upstream 6403 true chr1: 2678294-2684696 Medicago truncatula
Medtr1g012850 1.0kb upstream 1.0kb upstream 1000 false chr1: 2683697-2684696 Medicago truncatula
Medtr1g012850 1.0kb downstream 1.0kb downstream 6403 true chr1: 2677294-2683696 Medicago truncatula
Medtr1g012850 1.0kb downstream 1.0kb downstream 1000 false chr1: 2677294-2678293 Medicago truncatula
Medtr1g012850 2.0kb upstream 2.0kb upstream 7403 true chr1: 2678294-2685696 Medicago truncatula
Medtr1g012850 2.0kb upstream 2.0kb upstream 2000 false chr1: 2683697-2685696 Medicago truncatula
Medtr1g012850 2.0kb downstream 2.0kb downstream 7403 true chr1: 2676294-2683696 Medicago truncatula
Medtr1g012850 2.0kb downstream 2.0kb downstream 2000 false chr1: 2676294-2678293 Medicago truncatula
Medtr1g012850 5.0kb upstream 5.0kb upstream 10403 true chr1: 2678294-2688696 Medicago truncatula
Medtr1g012850 5.0kb upstream 5.0kb upstream 5000 false chr1: 2683697-2688696 Medicago truncatula
Medtr1g012850 5.0kb downstream 5.0kb downstream 10403 true chr1: 2673294-2683696 Medicago truncatula
Medtr1g012850 5.0kb downstream 5.0kb downstream 5000 false chr1: 2673294-2678293 Medicago truncatula
Medtr1g012850 10.0kb upstream 10.0kb upstream 15403 true chr1: 2678294-2693696 Medicago truncatula
Medtr1g012850 10.0kb upstream 10.0kb upstream 10000 false chr1: 2683697-2693696 Medicago truncatula
Medtr1g012850 10.0kb downstream 10.0kb downstream 15403 true chr1: 2668294-2683696 Medicago truncatula
Medtr1g012850 10.0kb downstream 10.0kb downstream 10000 false chr1: 2668294-2678293 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303624 5265 Fabidae View MSA
124073183 5270 Rosid View MSA
123742641 5271 Pentapetalae View MSA
122790177 5272 Eudicot View MSA
122041646 5273 Angiosperm View MSA
121347886 5274 Embryophyte View MSA
123424828 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.885       High
cufflinks 3.241        
cufflinks 3.9        
cufflinks 3.43        
cufflinks 3.591        
cufflinks 2.502       Low
cufflinks 4.104        
cufflinks 3.1        
cufflinks 4.075        

0 Strain