Gene : Medtr1g052840 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23240//PTHR23240:SF9 - DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED Description:  DNA repair metallo-beta-lactamase family protein
Genomic Order:  2756 Name:  ? Medtr1g052840
Secondary Identifier:  ? PAC:31097857
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g052840 0.5kb upstream 0.5kb upstream 7404 true chr1: 21908891-21916294 Medicago truncatula
Medtr1g052840 0.5kb upstream 0.5kb upstream 500 false chr1: 21908891-21909390 Medicago truncatula
Medtr1g052840 0.5kb downstream 0.5kb downstream 7404 true chr1: 21909391-21916794 Medicago truncatula
Medtr1g052840 0.5kb downstream 0.5kb downstream 500 false chr1: 21916295-21916794 Medicago truncatula
Medtr1g052840 1.0kb upstream 1.0kb upstream 7904 true chr1: 21908391-21916294 Medicago truncatula
Medtr1g052840 1.0kb upstream 1.0kb upstream 1000 false chr1: 21908391-21909390 Medicago truncatula
Medtr1g052840 1.0kb downstream 1.0kb downstream 7904 true chr1: 21909391-21917294 Medicago truncatula
Medtr1g052840 1.0kb downstream 1.0kb downstream 1000 false chr1: 21916295-21917294 Medicago truncatula
Medtr1g052840 2.0kb upstream 2.0kb upstream 8904 true chr1: 21907391-21916294 Medicago truncatula
Medtr1g052840 2.0kb upstream 2.0kb upstream 2000 false chr1: 21907391-21909390 Medicago truncatula
Medtr1g052840 2.0kb downstream 2.0kb downstream 8904 true chr1: 21909391-21918294 Medicago truncatula
Medtr1g052840 2.0kb downstream 2.0kb downstream 2000 false chr1: 21916295-21918294 Medicago truncatula
Medtr1g052840 5.0kb upstream 5.0kb upstream 11904 true chr1: 21904391-21916294 Medicago truncatula
Medtr1g052840 5.0kb upstream 5.0kb upstream 5000 false chr1: 21904391-21909390 Medicago truncatula
Medtr1g052840 5.0kb downstream 5.0kb downstream 11904 true chr1: 21909391-21921294 Medicago truncatula
Medtr1g052840 5.0kb downstream 5.0kb downstream 5000 false chr1: 21916295-21921294 Medicago truncatula
Medtr1g052840 10.0kb upstream 10.0kb upstream 16904 true chr1: 21899391-21916294 Medicago truncatula
Medtr1g052840 10.0kb upstream 10.0kb upstream 10000 false chr1: 21899391-21909390 Medicago truncatula
Medtr1g052840 10.0kb downstream 10.0kb downstream 16904 true chr1: 21909391-21926294 Medicago truncatula
Medtr1g052840 10.0kb downstream 10.0kb downstream 10000 false chr1: 21916295-21926294 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297277 5265 Fabidae View MSA
124073622 5270 Rosid View MSA
123741645 5271 Pentapetalae View MSA
122793173 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.032       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.071     Low  
cufflinks 0.068     Low  
cufflinks 0.002     Low  
cufflinks 0.023     Low  

0 Strain