Gene : Medtr1g052005 M. truncatula Mt4.0v1
Defline:  (1 of 603) PF07127 - Late nodulin protein (Nodulin_late) Description:  Nodule Cysteine-Rich (NCR) secreted peptide
Genomic Order:  2664 Name:  ? Medtr1g052005
Secondary Identifier:  ? PAC:31094552
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g052005 0.5kb upstream 0.5kb upstream 8303 true chr1: 20900243-20908545 Medicago truncatula
Medtr1g052005 0.5kb upstream 0.5kb upstream 500 false chr1: 20908046-20908545 Medicago truncatula
Medtr1g052005 0.5kb downstream 0.5kb downstream 8303 true chr1: 20899743-20908045 Medicago truncatula
Medtr1g052005 0.5kb downstream 0.5kb downstream 500 false chr1: 20899743-20900242 Medicago truncatula
Medtr1g052005 1.0kb upstream 1.0kb upstream 8803 true chr1: 20900243-20909045 Medicago truncatula
Medtr1g052005 1.0kb upstream 1.0kb upstream 1000 false chr1: 20908046-20909045 Medicago truncatula
Medtr1g052005 1.0kb downstream 1.0kb downstream 8803 true chr1: 20899243-20908045 Medicago truncatula
Medtr1g052005 1.0kb downstream 1.0kb downstream 1000 false chr1: 20899243-20900242 Medicago truncatula
Medtr1g052005 2.0kb upstream 2.0kb upstream 9803 true chr1: 20900243-20910045 Medicago truncatula
Medtr1g052005 2.0kb upstream 2.0kb upstream 2000 false chr1: 20908046-20910045 Medicago truncatula
Medtr1g052005 2.0kb downstream 2.0kb downstream 9803 true chr1: 20898243-20908045 Medicago truncatula
Medtr1g052005 2.0kb downstream 2.0kb downstream 2000 false chr1: 20898243-20900242 Medicago truncatula
Medtr1g052005 5.0kb upstream 5.0kb upstream 12803 true chr1: 20900243-20913045 Medicago truncatula
Medtr1g052005 5.0kb upstream 5.0kb upstream 5000 false chr1: 20908046-20913045 Medicago truncatula
Medtr1g052005 5.0kb downstream 5.0kb downstream 12803 true chr1: 20895243-20908045 Medicago truncatula
Medtr1g052005 5.0kb downstream 5.0kb downstream 5000 false chr1: 20895243-20900242 Medicago truncatula
Medtr1g052005 10.0kb upstream 10.0kb upstream 17803 true chr1: 20900243-20918045 Medicago truncatula
Medtr1g052005 10.0kb upstream 10.0kb upstream 10000 false chr1: 20908046-20918045 Medicago truncatula
Medtr1g052005 10.0kb downstream 10.0kb downstream 17803 true chr1: 20890243-20908045 Medicago truncatula
Medtr1g052005 10.0kb downstream 10.0kb downstream 10000 false chr1: 20890243-20900242 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121618718 5273 Angiosperm Singleton cluster - no MSA
122255986 5265 Fabidae Singleton cluster - no MSA
123997637 5270 Rosid Singleton cluster - no MSA
123571947 5271 Pentapetalae Singleton cluster - no MSA
122606670 5272 Eudicot Singleton cluster - no MSA
120890822 5274 Embryophyte Singleton cluster - no MSA
122931477 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.851        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain