Gene : Medtr1g007870 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF09341 - Transcription factor Pcc1 (Pcc1) Description:  transcription factor Pcc1
Genomic Order:  91 Name:  ? Medtr1g007870
Secondary Identifier:  ? PAC:31099334
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g007870 0.5kb upstream 0.5kb upstream 1875 true chr1: 604227-606101 Medicago truncatula
Medtr1g007870 0.5kb upstream 0.5kb upstream 500 false chr1: 604227-604726 Medicago truncatula
Medtr1g007870 0.5kb downstream 0.5kb downstream 1875 true chr1: 604727-606601 Medicago truncatula
Medtr1g007870 0.5kb downstream 0.5kb downstream 500 false chr1: 606102-606601 Medicago truncatula
Medtr1g007870 1.0kb upstream 1.0kb upstream 2375 true chr1: 603727-606101 Medicago truncatula
Medtr1g007870 1.0kb upstream 1.0kb upstream 1000 false chr1: 603727-604726 Medicago truncatula
Medtr1g007870 1.0kb downstream 1.0kb downstream 2375 true chr1: 604727-607101 Medicago truncatula
Medtr1g007870 1.0kb downstream 1.0kb downstream 1000 false chr1: 606102-607101 Medicago truncatula
Medtr1g007870 2.0kb upstream 2.0kb upstream 3375 true chr1: 602727-606101 Medicago truncatula
Medtr1g007870 2.0kb upstream 2.0kb upstream 2000 false chr1: 602727-604726 Medicago truncatula
Medtr1g007870 2.0kb downstream 2.0kb downstream 3375 true chr1: 604727-608101 Medicago truncatula
Medtr1g007870 2.0kb downstream 2.0kb downstream 2000 false chr1: 606102-608101 Medicago truncatula
Medtr1g007870 5.0kb upstream 5.0kb upstream 6375 true chr1: 599727-606101 Medicago truncatula
Medtr1g007870 5.0kb upstream 5.0kb upstream 5000 false chr1: 599727-604726 Medicago truncatula
Medtr1g007870 5.0kb downstream 5.0kb downstream 6375 true chr1: 604727-611101 Medicago truncatula
Medtr1g007870 5.0kb downstream 5.0kb downstream 5000 false chr1: 606102-611101 Medicago truncatula
Medtr1g007870 10.0kb upstream 10.0kb upstream 11375 true chr1: 594727-606101 Medicago truncatula
Medtr1g007870 10.0kb upstream 10.0kb upstream 10000 false chr1: 594727-604726 Medicago truncatula
Medtr1g007870 10.0kb downstream 10.0kb downstream 11375 true chr1: 604727-616101 Medicago truncatula
Medtr1g007870 10.0kb downstream 10.0kb downstream 10000 false chr1: 606102-616101 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311807 5265 Fabidae View MSA
124050256 5270 Rosid View MSA
123736925 5271 Pentapetalae View MSA
122787092 5272 Eudicot View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.644        
cufflinks 2.618        
cufflinks 3.004        
cufflinks 7.397        
cufflinks 3.032        
cufflinks 16.049     High High
cufflinks 4.44        
cufflinks 2.579        
cufflinks 6.278        

0 Strain