Gene : Medtr1g008600 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF00270//PF00271//PF00476 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // DNA polymerase family A (DNA_pol_A) Description:  ATP-binding; ATP-dependent helicase; DNA helicase
Genomic Order:  138 Name:  ? Medtr1g008600
Secondary Identifier:  ? PAC:31092718
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g008600 0.5kb upstream 0.5kb upstream 15900 true chr1: 976147-992046 Medicago truncatula
Medtr1g008600 0.5kb upstream 0.5kb upstream 500 false chr1: 991547-992046 Medicago truncatula
Medtr1g008600 0.5kb downstream 0.5kb downstream 15900 true chr1: 975647-991546 Medicago truncatula
Medtr1g008600 0.5kb downstream 0.5kb downstream 500 false chr1: 975647-976146 Medicago truncatula
Medtr1g008600 1.0kb upstream 1.0kb upstream 16400 true chr1: 976147-992546 Medicago truncatula
Medtr1g008600 1.0kb upstream 1.0kb upstream 1000 false chr1: 991547-992546 Medicago truncatula
Medtr1g008600 1.0kb downstream 1.0kb downstream 16400 true chr1: 975147-991546 Medicago truncatula
Medtr1g008600 1.0kb downstream 1.0kb downstream 1000 false chr1: 975147-976146 Medicago truncatula
Medtr1g008600 2.0kb upstream 2.0kb upstream 17400 true chr1: 976147-993546 Medicago truncatula
Medtr1g008600 2.0kb upstream 2.0kb upstream 2000 false chr1: 991547-993546 Medicago truncatula
Medtr1g008600 2.0kb downstream 2.0kb downstream 17400 true chr1: 974147-991546 Medicago truncatula
Medtr1g008600 2.0kb downstream 2.0kb downstream 2000 false chr1: 974147-976146 Medicago truncatula
Medtr1g008600 5.0kb upstream 5.0kb upstream 20400 true chr1: 976147-996546 Medicago truncatula
Medtr1g008600 5.0kb upstream 5.0kb upstream 5000 false chr1: 991547-996546 Medicago truncatula
Medtr1g008600 5.0kb downstream 5.0kb downstream 20400 true chr1: 971147-991546 Medicago truncatula
Medtr1g008600 5.0kb downstream 5.0kb downstream 5000 false chr1: 971147-976146 Medicago truncatula
Medtr1g008600 10.0kb upstream 10.0kb upstream 25400 true chr1: 976147-1001546 Medicago truncatula
Medtr1g008600 10.0kb upstream 10.0kb upstream 10000 false chr1: 991547-1001546 Medicago truncatula
Medtr1g008600 10.0kb downstream 10.0kb downstream 25400 true chr1: 966147-991546 Medicago truncatula
Medtr1g008600 10.0kb downstream 10.0kb downstream 10000 false chr1: 966147-976146 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303799 5265 Fabidae View MSA
124071198 5270 Rosid View MSA
123739145 5271 Pentapetalae View MSA
122788127 5272 Eudicot View MSA
122049803 5273 Angiosperm View MSA
121347623 5274 Embryophyte View MSA
123426060 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.359        
cufflinks 0.284        
cufflinks 0.267        
cufflinks 0.057     Low Low
cufflinks 0.287        
cufflinks 0.076     Low Low
cufflinks 0.236        
cufflinks 0.172        
cufflinks 0.25        

0 Strain