Gene : Medtr1g057280 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II reaction center protein
Genomic Order:  3057 Name:  ? Medtr1g057280
Secondary Identifier:  ? PAC:31100533
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g057280 0.5kb upstream 0.5kb upstream 1231 true chr1: 25174609-25175839 Medicago truncatula
Medtr1g057280 0.5kb upstream 0.5kb upstream 500 false chr1: 25175340-25175839 Medicago truncatula
Medtr1g057280 0.5kb downstream 0.5kb downstream 1231 true chr1: 25174109-25175339 Medicago truncatula
Medtr1g057280 0.5kb downstream 0.5kb downstream 500 false chr1: 25174109-25174608 Medicago truncatula
Medtr1g057280 1.0kb upstream 1.0kb upstream 1731 true chr1: 25174609-25176339 Medicago truncatula
Medtr1g057280 1.0kb upstream 1.0kb upstream 1000 false chr1: 25175340-25176339 Medicago truncatula
Medtr1g057280 1.0kb downstream 1.0kb downstream 1731 true chr1: 25173609-25175339 Medicago truncatula
Medtr1g057280 1.0kb downstream 1.0kb downstream 1000 false chr1: 25173609-25174608 Medicago truncatula
Medtr1g057280 2.0kb upstream 2.0kb upstream 2731 true chr1: 25174609-25177339 Medicago truncatula
Medtr1g057280 2.0kb upstream 2.0kb upstream 2000 false chr1: 25175340-25177339 Medicago truncatula
Medtr1g057280 2.0kb downstream 2.0kb downstream 2731 true chr1: 25172609-25175339 Medicago truncatula
Medtr1g057280 2.0kb downstream 2.0kb downstream 2000 false chr1: 25172609-25174608 Medicago truncatula
Medtr1g057280 5.0kb upstream 5.0kb upstream 5731 true chr1: 25174609-25180339 Medicago truncatula
Medtr1g057280 5.0kb upstream 5.0kb upstream 5000 false chr1: 25175340-25180339 Medicago truncatula
Medtr1g057280 5.0kb downstream 5.0kb downstream 5731 true chr1: 25169609-25175339 Medicago truncatula
Medtr1g057280 5.0kb downstream 5.0kb downstream 5000 false chr1: 25169609-25174608 Medicago truncatula
Medtr1g057280 10.0kb upstream 10.0kb upstream 10731 true chr1: 25174609-25185339 Medicago truncatula
Medtr1g057280 10.0kb upstream 10.0kb upstream 10000 false chr1: 25175340-25185339 Medicago truncatula
Medtr1g057280 10.0kb downstream 10.0kb downstream 10731 true chr1: 25164609-25175339 Medicago truncatula
Medtr1g057280 10.0kb downstream 10.0kb downstream 10000 false chr1: 25164609-25174608 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122257339 5265 Fabidae Singleton cluster - no MSA
124074892 5270 Rosid View MSA
123753442 5271 Pentapetalae View MSA
122794783 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.081        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain